SPARQLthon20/MicrobeDB.jp

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MicrobeDB.jp

微生物統合DB http://microbedb.jp/MDB/ について、新たに取り組むべき課題の列挙

  • ゲノム
    • RefSeqゲノムデータの更新
      • 真核原核を同じRDFモデルで記述するか？　（既存コンバータを真核ゲノムと原核ゲノムで試して確認をして、DBCLSとやり取りしながら、確定する。）
      • ドラフトゲノムの統計量（RefSeq、SGD、AspGD、Phytozome)
      • RDFモデルの更新 (RDF Summitの結果を受けて更新）
      • ドラフトゲノムを含めるか？
    • 真核微生物ゲノムデータのRDF作成
      • ドラフトゲノムが基本
      • Feature間の関係情報の見直し SO baseでSIOも使う（sio:hasValueがDataTypePropertyなので、Exon間の順序を記述するのに使える。SOにはDataTypePropertyがない)
  • メタゲノム
    • メタゲノムデータ取得から遺伝子コンテンツ計算までの出来るだけの自動化
      • 計算高速化の工夫
      • Multiplex（1配列ファイルに複数サンプル)をどうするか？
    • 遺伝子コンテンツデータにしてからの解析Stanzaの開発
    • 分離源データ等の様々なメタデータのオントロジーマッピング (MEO,MSV,PDO-CSSOの更新含む)
    • IMG/M、MG-RASTからのデータの取得と、冗長性排除
    • 感染症オントロジーと連携したStanza構築
  • オーソログ
    • 真核微生物とあわせたオーソロググループの構築　（ドメイン単位なので真核入れるとどうなるか？　Genome Refineがらみでドラフトゲノム関連の対応も含む）
    • 情報公開（purl.jp転送設定、BioPortal登録、データセットに対するメタデータの記述、Paper）
    • その他技術的なこと（TopBraid [1] [2], OmniGraffleの利用）
    • オーソログの比較に用いる情報に関する考察
      • Open World Assumption に従うならば、アノテーションがないサンプルを負例とはみなせない [3]
  • 菌株（WGSなどのアノテーション無しゲノムデータをMiGAPで処理してアノテーション付けを自分達でしてしまうべきか？）
    • 分離源データ等の様々なメタデータのオントロジーマッピング
    • 異なる菌株保存機関の株をまとめる菌株IDの生成 (NCBI Taxonomyで種まで、StrainはBioSampleを束ねる空白ノードかなにかを自分たちでとりあえず作るしか無い。記述があるもののみ。自分たちでcurationはしない。全自動。taxonomy.owlを継承する？ DBCLSとも共同で）
    • ゲノム解読済み株を利用した菌株と他の情報をあわせたStanzaの開発
    • 真菌類・藻類向けの菌株メタデータの充実
  • オミックス（サンプルデータを使ってフローをまわしてみる。 Reference Genome無くても、遺伝研パイプラインでReference手軽に見つけられるかも。マッピング結果のRDF化。RPKMで遺伝子ごとにする？サンプル間で平均値化して転写開始点を予測？）
    • RNA-Seqの配列データ・メタデータ取得
      • Reference Genomeが存在するデータのみ？
      • Reference Genomeが存在するか否かは容易に判断可能か？
    • RNA-Seq等の実験条件のメタデータ整理
    • サンプル間の比較解析Stanza
  • 真菌類全般（とりあえず状況調査。統計量を計算）
    • 遺伝子クラスターのRDF表現
    • RNA-SeqデータのSGD, AspGDからの取得
    • 真核メタゲノム、Ampicon Sequencingへの対応
  • MiGAP/MeGAPを利用したユーザデータの取り込み (ID、オントロジーどうするかを話し合う必要がある)
    • 入力して欲しいメタデータのリストアップ
    • MeGAP-GenomeRefine連携
  • システム（ページ単位での表示の限界。Stanza ontology？キーワード検索からのフロー。RDFから検索キーワードindex作成すべきか？検索システムどうするか？)
    • user stanzaどうするか？ stanza repository?
    • 検索システムをどうするか？
      • キーワード-Stanza対応データ
      • Stanza間の関係性の記述？
    • オントロジーマッピング半自動化

8についての議論のメモ

MEO, Taxonomy, SO以外は、データを細かくクラス付けて検索する対象をオントロジー単位で絞る

認証があるので、個人に特化できる。

Stanza APIがあると良い。

Moreボタンか、スクロールすれば、一気にSPARQL問い合わせが大量にという問題は解決可能・

キーワードからなぜそのStanzaにたどり着いたのかを視覚化するStanza

キーワードからオントロジーのラベルを検索する

キーワードtoオントロジーを考えた瞬間に、データへのオントロジーマッピングは見直す必要がある。

Stanzaごとに、関連するオントロジーをDB化する？

特にDBCLSや他のグループと連携して解決して行きたい課題

ゲノム

MicrobeDB.jpでは、RefSeqのゲノムデータをRDF化している。

真核微生物と原核生物のゲノムを同じRDFモデルで記述したい。

問題点: 真核微生物はエクソンーイントロン構造があるために、gene、transcript、protein間の関係性が原核生物とは異なる。

（既存コンバータを真核ゲノムと原核ゲノムで試して確認をして、DBCLSとやり取りしながら、RDFモデルを確定する。）　


オーソログ

真核微生物とあわせたオーソロググループの構築　（MBGDはドメイン単位なので真核入れるとどうなるか？）

問題点: MBGD以外のオーソログとのマッピング


系統（菌株）

問題点:微生物は株まで区別するのが必須。しかしながら、今まで依存していたNCBI Taxonomyは今後種までしかアサインされない。

株レベルのIDどうするかは世界的にも未定。BioSample IDや菌株保存機関の菌株IDがついているものについては、それらを束ねるIDまたは空白ノードをこちらで自動的に割りふる。DBCLSと共同で。

自分達でマニュアルで割り振る作業は出来るだけ避けたい。


オミックス（RNA-Seq)

問題点: RNA-SeqデータをReference Genomeにマッピングした結果をどうRDF化するか？(遺伝子ごとにRPKMを計算してRDF化？)

問題点2: Reference Genome無いRNA-Seqデータをどうするか？（既存ゲノム中からReference Genomeを自動で見つけるフローを採用する？)


検索システム

問題点: キーワード検索する際に、100以上のStanza全てにキーワードを元にSPARQL検索するのか？

検索するStanzaを絞り込む or Triple Storeのクラスターマシンによる分散

RDFから検索キーワードindex作成？

Stanza ontologyを作って検索対象とする？

対象真核生物とゲノム情報の調査

Prokaryotes

ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/prokaryotes.txt からArchaeaとBacteriaをカウント 2014.05.28

  • Archaea 375プロジェクト
  • Bacteria 24119プロジェクト

Eukaryotes/Fungi

ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/eukaryotes.txt から FungiかつAscomycota を抽出 2014.05.28

その後、モデル微生物の、Saccharomyces、Asperguillus、Schizosaccharomycesの3Genusを含み、キノコは含まない系統区分である、Saccharomycotina（亜門）、Eurotiomycetes（綱）、Taphrinomycotina（亜門）の3系統区分のデータを抽出

  • Saccharomycotina（亜門）　153プロジェクト
  • Eurotiomycetes（綱）　128プロジェクト
  • Taphrinomycotina（亜門）　8プロジェクト

下の表でGeneとProteinが空欄になっている株は、ざっと見た限りでは、配列だけ公開されていてアノテーションがされていない株。

Eukaryotes/Green Algae

ftp://ftp.ncbi.nlm.nih.gov/genomes/GENOME_REPORTS/eukaryotes.txt から Green Algae を抽出 2014.05.28

  • Phylum Chlorophyta 9 プロジェクト

Eukaryotes/Red Algae

Genome_Report/RDF + Taxonomy.owl でtax_root = 2763 以下をSPARQLで問い合わせ

  • Phylum Rhodophyta 4プロジェクト 要検討

Eukaryotes/Streptophyta

  • 要検討

Fungi ゲノムプロジェクト

#Organism/Name TaxID BioProject Accession BioProject ID Group SubGroup Size (Mb) GC% Assembly Accession Chromosomes Organelles Plasmids WGS Scaffolds Genes Proteins Release Date Modify Date Status Center BioSample Accession
Saccharomyces cerevisiae S288c 559292 PRJNA13838 13838 Fungi Ascomycetes 12.1571 38.1556 GCA_000146045.2 16 1 - - 17 6349 5906 1999/11/8 2013/9/6 Gapless Chromosome Sanger Institute -
Saccharomyces cerevisiae Sigma1278b 658763 PRJNA39317 39317 Fungi Ascomycetes 11.9459 38.3049 GCA_000151485.1 16 - - ACVY01 16 - - 2010/4/29 2010/5/14 Chromosome Broad Institute -
Saccharomyces cerevisiae AWRI796 764097 PRJNA48559 48559 Fungi Ascomycetes 11.7417 38.2042 GCA_000190195.1 16 - - ADVS01 89 5153 3681 2011/2/11 2011/2/23 Chromosome The Australian Wine Research Institute -
Saccharomyces cerevisiae Vin13 764099 PRJNA48563 48563 Fungi Ascomycetes 11.6675 38.23 GCA_000190215.1 16 - - ADXC01 107 5122 3813 2011/2/11 2011/2/25 Chromosome The Australian Wine Research Institute -
Saccharomyces cerevisiae VL3 764100 PRJNA48565 48565 Fungi Ascomycetes 11.6622 38.2337 GCA_000190235.1 16 - - AEJS01 84 5128 3872 2011/2/11 2011/2/25 Chromosome The Australian Wine Research Institute -
Saccharomyces cerevisiae FostersB 764102 PRJNA48569 48569 Fungi Ascomycetes 11.5146 38.22 GCA_000190255.1 16 - - AEHH01 90 5068 3581 2011/2/11 2011/2/25 Chromosome The Australian Wine Research Institute -
Saccharomyces cerevisiae CEN.PK113-7D 889517 PRJNA52955 52955 Fungi Ascomycetes 11.9991 38.7028 GCA_000269885.1 16 - - AEHG01 70 5444 5444 2012/6/18 2012/6/19 Chromosome Chalmers University of Technology -
Saccharomyces cerevisiae W303 580240 PRJNA83445 83445 Fungi Ascomycetes 12.1532 38.3352 GCA_000292815.1 16 1 1 ALAV01 18 - - 2012/8/24 2013/2/28 Chromosome Max Planck Institute Molecular Genetics -
Saccharomyces cerevisiae EC1118 643680 PRJEA37863 37863 Fungi Ascomycetes 11.6595 38.3 GCA_000218975.1 - - - - 31 7248 6017 - - Scaffold Genoscope -
Saccharomyces cerevisiae Kyokai no. 7 721032 PRJNA45827 45827 Fungi Ascomycetes 12.3892 38.5 GCA_000260735.1 - - - BABQ01 522 6592 5795 2011/9/22 2013/8/1 Scaffold National Research Institute of Brewing -
Saccharomyces cerevisiae Lalvin QA23 764098 PRJNA48561 48561 Fungi Ascomycetes 11.8041 38.3 GCA_000325965.1 - - - ADVV01 185 5339 4022 2011/2/11 2011/2/17 Scaffold The Australian Wine Research Institute -
Saccharomyces cerevisiae RM11-1a 285006 PRJNA13674 13674 Fungi Ascomycetes 11.737 38.3 GCA_000149365.1 - - - AAEG01 17 5960 5377 2005/3/16 2008/6/16 Scaffold Broad Institute -
Saccharomyces cerevisiae Y10 462210 PRJNA60201 60201 Fungi Ascomycetes 14.2673 38.2 GCA_000192375.1 - - - AEWK01 1157 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae CBS 7960 929587 PRJNA60391 60391 Fungi Ascomycetes 12.9079 39.3 GCA_000192455.1 - - - AEWL01 1402 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae CLIB324 929629 PRJNA60415 60415 Fungi Ascomycetes 13.4362 38.2 GCA_000192495.1 - - - AEWM01 998 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae YJM269 929586 PRJNA60389 60389 Fungi Ascomycetes 12.4093 38.2 GCA_000192515.1 - - - AEWN01 451 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae FL100 947036 PRJNA60147 60147 Fungi Ascomycetes 12.4154 38.2 GCA_000192535.1 - - - AEWO01 926 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae CLIB215 464025 PRJNA60143 60143 Fungi Ascomycetes 12.4385 38.2 GCA_000192555.1 - - - AEWP01 583 - - 2011/3/11 2011/3/18 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae PW5 947039 PRJNA60181 60181 Fungi Ascomycetes 11.8024 38.2 GCA_000209265.1 - - - AFDC01 461 - - 2011/4/25 2011/4/26 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae UC5 947040 PRJNA60197 60197 Fungi Ascomycetes 11.7165 38.2 GCA_000209285.1 - - - AFDD01 506 - - 2011/4/25 2011/4/26 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae T73 471859 PRJNA60195 60195 Fungi Ascomycetes 12.4352 38.3 GCA_000209305.1 - - - AFDF01 2689 - - 2011/4/25 2011/4/26 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae CLIB382 947035 PRJNA60145 60145 Fungi Ascomycetes 10.2559 38.4 GCA_000209345.1 - - - AFDG01 10262 - - 2011/4/25 2011/4/26 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae T7 929585 PRJNA60387 60387 Fungi Ascomycetes 11.7814 38.2 GCA_000209365.1 - - - AFDE01 212 - - 2011/4/25 2011/4/26 Scaffold Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine -
Saccharomyces cerevisiae EC9-8 1095001 PRJNA73985 73985 Fungi Ascomycetes 12.2998 38.2 GCA_000234495.1 - - - AGSJ01 96 - - 2011/11/4 2011/11/7 Scaffold Academia Sinica -
Saccharomyces cerevisiae M3707 1149757 PRJNA174688 174688 Fungi Ascomycetes 11.5097 38.2 GCA_000365045.1 - - - AMQB01 42 - - 2013/4/15 2013/6/18 Scaffold DOE Joint Genome Institute -
Saccharomyces cerevisiae M3836 1162671 PRJNA174689 174689 Fungi Ascomycetes 11.5327 38.3 GCA_000365065.1 - - - AMQC01 52 - - 2013/4/15 2013/6/18 Scaffold DOE Joint Genome Institute -
Saccharomyces cerevisiae M3837 1162672 PRJNA174690 174690 Fungi Ascomycetes 11.5303 38.2 GCA_000365085.1 - - - AMQD01 45 - - 2013/4/15 2013/6/18 Scaffold DOE Joint Genome Institute -
Saccharomyces cerevisiae M3838 1162673 PRJNA174691 174691 Fungi Ascomycetes 11.5716 38.2 GCA_000365105.1 - - - AMQE01 34 - - 2013/4/15 2013/6/18 Scaffold DOE Joint Genome Institute -
Saccharomyces cerevisiae M3839 1162674 PRJNA174692 174692 Fungi Ascomycetes 11.5502 38.2 GCA_000365125.1 - - - AMQF01 44 - - 2013/4/15 2013/6/18 Scaffold DOE Joint Genome Institute -
Saccharomyces cerevisiae YJM789 307796 PRJNA13304 13304 Fungi Ascomycetes 11.991 38.3 GCA_000181435.1 - - - AAFW02 258 5903 5902 2005/1/6 2007/8/3 Contig Stanford University -
Saccharomyces cerevisiae M22 538975 PRJNA28815 28815 Fungi Ascomycetes 10.7768 38.8 GCA_000182075.1 - - - ABPC01 6145 - - 2008/6/16 2008/9/26 Contig Washington University School of Medicine (WashU) -
Saccharomyces cerevisiae YPS163 538976 PRJNA28813 28813 Fungi Ascomycetes 10.7188 38.5 GCA_000182095.1 - - - ABPD01 4725 - - 2008/6/16 2008/9/26 Contig Washington University School of Medicine (WashU) -
Saccharomyces cerevisiae AWRI1631 545124 PRJNA30553 30553 Fungi Ascomycetes 11.1769 38.2 GCA_000182175.1 - - - ABSV01 2484 5590 5451 2008/9/30 2008/9/30 Contig "The Australian Wine Research Institute (AWRI), Australia" -
Saccharomyces cerevisiae JAY291 574961 PRJNA32809 32809 Fungi Ascomycetes 11.5381 38.1 GCA_000182315.2 - - - ACFL01 453 5665 5197 2009/8/20 2012/5/25 Contig Duke University Medical Center -
Saccharomyces cerevisiae ZTW1 1227742 PRJNA174065 174065 Fungi Ascomycetes 11.4148 38.3 GCA_000308935.1 - - - AMDD01 33 - - 2012/10/31 2012/10/31 Contig College of life science -
Saccharomyces cerevisiae FostersO 764101 PRJNA48567 48567 Fungi Ascomycetes 11.6849 38.2 GCA_000326005.1 - - - AEEZ01 222 5215 3575 2011/2/11 2011/2/17 Contig The Australian Wine Research Institute -
Saccharomyces cerevisiae NY1308 1331972 PRJNA202086 202086 Fungi Ascomycetes 11.5142 38.2 GCA_000416405.1 - - - ASJZ01 35 - - 2013/6/28 2013/6/28 Contig Zhejiang University -
Saccharomyces cerevisiae 4932 PRJNA13838 13838 Fungi Ascomycetes 0.67254 35.8509 GCA_000091065.1 2 1 - - 3 197 327 1992/3/16 2008/10/23 Gapless Chromosome Sanger Institute -
Candida albicans SC5314 237561 PRJNA10701 10701 Fungi Ascomycetes 27.5589 33.4 GCA_000182965.2 - - - AACQ01 413 14217 14217 2004/4/21 2009/11/10 Contig Stanford University -
Candida albicans WO-1 294748 PRJNA16373 16373 Fungi Ascomycetes 14.473 33.6111 GCA_000149445.2 5 - - AAFO01 17 2983 2815 2006/3/28 2009/6/10 Chromosome Broad Institute -
Candida albicans A123 1182537 PRJNA165033 165033 Fungi Ascomycetes 14.638 33.3 GCA_000447455.1 - - - AVAR01 75 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A92 1182536 PRJNA165031 165031 Fungi Ascomycetes 14.6074 33.4 GCA_000447475.1 - - - AVAS01 54 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A203 1182540 PRJNA165039 165039 Fungi Ascomycetes 14.7854 33.4 GCA_000447495.1 - - - AVAT01 50 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A67 1182535 PRJNA165029 165029 Fungi Ascomycetes 14.6882 33.4 GCA_000447515.1 - - - AVAU01 64 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A48 1182534 PRJNA165027 165027 Fungi Ascomycetes 14.7 33.3 GCA_000447535.1 - - - AVAV01 87 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans CHN1 1182532 PRJNA165023 165023 Fungi Ascomycetes 14.7275 33.3 GCA_000447555.1 - - - AVAW01 84 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A20 1182533 PRJNA165025 165025 Fungi Ascomycetes 14.553 33.4 GCA_000447575.1 - - - AVAX01 71 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans 3153A 1182531 PRJNA165021 165021 Fungi Ascomycetes 14.89 33.3 GCA_000447595.1 - - - AVAY01 100 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A155 1182538 PRJNA165035 165035 Fungi Ascomycetes 14.4651 33.4 GCA_000447615.1 - - - AVAZ01 84 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A84 1182539 PRJNA165037 165037 Fungi Ascomycetes 14.6916 33.3 GCA_000447635.1 - - - AVBA01 86 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Saccharomyces bayanus 623-6C 226231 PRJNA1443 1443 Fungi Ascomycetes 11.8653 40.2 GCA_000167035.1 - - - AACG02 586 - - 2003/5/22 2009/1/23 Contig Washington University School of Medicine -
Saccharomyces bayanus MCYC 623 226127 PRJNA1441 1441 Fungi Ascomycetes 11.4775 40.2 GCA_000166995.1 - - - AACA01 1098 - - 2003/3/28 2007/1/17 Contig Broad Institute -
Saccharomyces mikatae IFO 1815 226126 PRJNA374 374 Fungi Ascomycetes 11.4703 38 GCA_000166975.1 - - - AABZ01 1648 - - 2003/3/28 2007/1/17 Contig Broad Institute -
Saccharomyces mikatae IFO 1815 226126 PRJNA9601 9601 Fungi Ascomycetes 10.7717 38.1 GCA_000167055.1 - - - AACH01 2808 - - 2003/5/22 2009/1/23 Contig Washington University School of Medicine -
Saccharomyces paradoxus NRRL Y-17217 226125 PRJNA1440 1440 Fungi Ascomycetes 11.8726 38.7 GCA_000166955.1 - - - AABY01 832 - - 2003/3/28 2007/1/17 Contig Broad Institute -
Saccharomyces kudriavzevii FM1066 1163645 PRJNA42347 42347 Fungi Ascomycetes 8.72945 39.8 GCA_000256765.1 - - - AJHS01 1633 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829192
Saccharomyces kudriavzevii IFO 1802 226230 PRJNA1442 1442 Fungi Ascomycetes 11.1891 32.1 GCA_000167075.2 - - - AACI03 2054 - 3764 2003/5/22 2012/8/22 Scaffold Washington University School of Medicine -
Saccharomyces kudriavzevii FM1056 1163633 PRJNA42347 42347 Fungi Ascomycetes 10.0757 41.1 GCA_000256055.1 - - - AJHP01 1780 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829180
Saccharomyces kudriavzevii FM1057 1163634 PRJNA42347 42347 Fungi Ascomycetes 9.31839 39.3 GCA_000256745.1 - - - AJHQ01 1717 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829181
Saccharomyces kudriavzevii FM1062 1163641 PRJNA42347 42347 Fungi Ascomycetes 9.09322 39.4 GCA_000256785.1 - - - AJHR01 1673 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829188
Saccharomyces kudriavzevii FM1073 1163639 PRJNA42347 42347 Fungi Ascomycetes 9.38638 38.4 GCA_000256805.1 - - - AJHW01 1706 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829186
Saccharomyces kudriavzevii FM1071 1165457 PRJNA42347 42347 Fungi Ascomycetes 10.0825 39.1 GCA_000256825.1 - - - AJHU01 1785 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829604
Saccharomyces kudriavzevii FM1072 1163638 PRJNA42347 42347 Fungi Ascomycetes 10.0348 39.7 GCA_000256845.1 - - - AJHV01 1781 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829185
Saccharomyces kudriavzevii FM1069 1163632 PRJNA42347 42347 Fungi Ascomycetes 10.4009 39.5 GCA_000256865.1 - - - AJHT01 1806 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829179
Saccharomyces kudriavzevii FM1076 1163643 PRJNA42347 42347 Fungi Ascomycetes 10.0321 40.5 GCA_000256885.1 - - - AJHZ01 1778 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829190
Saccharomyces kudriavzevii FM1075 1163642 PRJNA42347 42347 Fungi Ascomycetes 9.54964 39.9 GCA_000256905.1 - - - AJHY01 1735 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829189
Saccharomyces kudriavzevii FM1074 1163640 PRJNA42347 42347 Fungi Ascomycetes 9.64686 38.5 GCA_000256925.1 - - - AJHX01 1739 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829187
Saccharomyces kudriavzevii FM1094 1165458 PRJNA42347 42347 Fungi Ascomycetes 8.57223 38.2 GCA_000256965.1 - - - AJID01 1605 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829605
Saccharomyces kudriavzevii FM1077 1163644 PRJNA42347 42347 Fungi Ascomycetes 10.2875 40 GCA_000256985.1 - - - AJIA01 1803 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829191
Saccharomyces kudriavzevii FM1078 1163636 PRJNA42347 42347 Fungi Ascomycetes 10.2117 39.5 GCA_000257005.1 - - - AJIB01 1794 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829183
Saccharomyces kudriavzevii FM1079 1163637 PRJNA42347 42347 Fungi Ascomycetes 9.92267 39 GCA_000257025.1 - - - AJIC01 1757 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829184
Saccharomyces kudriavzevii ZP591 1165456 PRJNA42347 42347 Fungi Ascomycetes 10.6821 39.8 GCA_000257045.1 - - - AJIH01 1814 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829603
Saccharomyces kudriavzevii IFO1803 1163648 PRJNA42347 42347 Fungi Ascomycetes 10.3644 39.8 GCA_000257065.1 - - - AJIG01 1798 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829195
Saccharomyces kudriavzevii IFO10991 1163647 PRJNA42347 42347 Fungi Ascomycetes 10.4793 40.4 GCA_000257085.1 - - - AJIF01 1818 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829194
Saccharomyces kudriavzevii IFO10990 1163646 PRJNA42347 42347 Fungi Ascomycetes 10.5207 40.5 GCA_000257105.1 - - - AJIE01 1817 - - 2012/3/23 2012/4/20 Scaffold University of Colorado Denver Health Sciences Center SAMN00829193
Naumovozyma castellii CBS 4309 1064592 PRJEA70625 70625 Fungi Ascomycetes 11.2195 36.7559 GCA_000237345.1 10 - - - 10 5870 5592 2011/8/1 2012/5/11 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin" -
Naumovozyma castellii NRRL Y-12630 226301 PRJNA1444 1444 Fungi Ascomycetes 11.2423 36.8 GCA_000167015.1 - - - AACF01 570 - - 2003/5/22 2009/1/23 Contig Washington University School of Medicine -
Lachancea kluyveri NRRL Y-12651 226302 PRJNA1445 1445 Fungi Ascomycetes 11.5091 41.5088 GCA_000149225.1 8 - - AACE03 32 - - 2003/5/22 2009/3/2 Chromosome Washington University School of Medicine -
Ashbya gossypii ATCC 10895 284811 PRJNA13834 13834 Fungi Ascomycetes 9.11931 51.6989 GCA_000091025.4 7 1 - - 8 5356 4776 2004/3/4 2012/8/17 Gapless Chromosome "Biozentrum, University of Basel, Switzerland" -
Lachancea waltii NCYC 2644 262981 PRJNA10734 10734 Fungi Ascomycetes 10.9121 44.3 GCA_000167115.1 - - - AADM01 713 - - 2004/3/15 2007/1/17 Contig Broad Institute -
Candida glabrata 5478 PRJNA13831 13831 Fungi Ascomycetes 12.3383 38.6198 GCA_000002545.2 13 1 - - 14 5499 5213 2004/6/30 2010/12/23 Chromosome with gaps Genolevures Consortium -
Kluyveromyces lactis 28985 PRJNA13835 13835 Fungi Ascomycetes 10.7294 38.7053 GCA_000002515.1 6 1 - - 7 5412 5085 2004/7/3 2012/3/16 Gapless Chromosome Genolevures Consortium -
Yarrowia lipolytica CLIB122 284591 PRJNA13837 13837 Fungi Ascomycetes 20.5509 48.9801 GCA_000002525.1 6 1 - - 7 7357 6472 2004/7/3 2012/3/16 Chromosome with gaps Genolevures Consortium -
Debaryomyces hansenii var. hansenii MTCC 234 1118155 PRJNA77881 77881 Fungi Ascomycetes 11.4623 35.4 GCA_000239015.2 - - - AHBE01 541 - - 2011/12/20 2012/7/19 Contig "Institute of Microbial Technology,Chandigarh,INDIA" -
Zygosaccharomyces rouxii 4956 PRJNA12502 12502 Fungi Ascomycetes 9.76464 39.1509 GCA_000026365.1 7 - - - 7 5332 4991 2009/6/5 2010/4/14 Chromosome with gaps Genolevures Consortium -
Lachancea thermotolerans CBS 6340 559295 PRJNA12499 12499 Fungi Ascomycetes 10.3929 47.2838 GCA_000142805.1 8 - - - 8 5498 5091 2009/6/5 2012/2/29 Chromosome with gaps Génolevures Consortium -
Millerozyma farinosa CBS 7064 559304 PRJEA73835 73835 Fungi Ascomycetes 21.4596 41.3602 GCA_000315895.1 14 - - - 14 11662 11175 2011/11/10 2013/2/7 Chromosome with gaps Genolevures -
Millerozyma farinosa 4920 PRJNA40561 40561 Fungi Ascomycetes 21.4987 41.3268 - 14 1 - - - 11714 11200 2011/11/10 2013/2/7 Complete NCBI -
Candida tropicalis MYA-3404 294747 PRJNA13675 13675 Fungi Ascomycetes 14.6301 33.2 GCA_000006335.2 - - - AAFN02 24 6441 6254 2005/3/16 2010/6/15 Scaffold Broad Institute -
Meyerozyma guilliermondii ATCC 6260 294746 PRJNA12729 12729 Fungi Ascomycetes 10.61 43.8 GCA_000149425.1 - - - AAFM01 9 6062 5920 2005/3/17 2010/7/19 Scaffold Broad Institute -
Clavispora lusitaniae ATCC 42720 306902 PRJNA12753 12753 Fungi Ascomycetes 12.1149 44.5 GCA_000003835.1 - - - AAFT01 9 6153 5936 2005/3/16 2009/10/9 Scaffold Broad Institute -
Clavispora lusitaniae MTCC 1001 1314667 PRJNA195921 195921 Fungi Ascomycetes 11.9685 44.5 GCA_000410855.1 - - - APWW01 163 - - 2013/6/13 2013/6/13 Contig Institute of Microbial Technology -
Lodderomyces elongisporus NRRL YB-4239 379508 PRJNA12899 12899 Fungi Ascomycetes 15.5473 36.9 GCA_000149685.1 - - - AAPO01 28 5908 5799 2006/8/10 2009/8/26 Scaffold Broad Institute -
Scheffersomyces stipitis CBS 6054 322104 PRJNA16843 16843 Fungi Ascomycetes 15.4412 41.1534 GCA_000209165.1 8 - - AAVQ01 8 5816 5816 2007/2/23 2010/7/19 Chromosome DOE Joint Genome Institute SAMN02746101
Komagataella pastoris GS115 644223 PRJEA37871 37871 Fungi Ascomycetes 9.21638 41.1319 GCA_000027005.1 4 - - - 4 5040 5040 2009/5/25 2009/7/22 Chromosome with gaps "Unit for Molecular Glycobiology, Department for Molecular Biomedical Research, VIB, UGent, Belgium" -
Komagataella pastoris CBS 7435 981350 PRJEA62483 62483 Fungi Ascomycetes 9.40272 41.0841 GCA_000223565.1 4 1 - - 5 5202 5017 2011/4/6 2011/7/25 Chromosome with gaps "Institute for Genomics and Bioinformatics, Graz University of Technology" -
Komagataella pastoris DSMZ 70382 638632 PRJNA36683 36683 Fungi Ascomycetes 9.40545 41.3 GCA_000182785.1 - - - CABH01 326 - - 2009/6/5 2009/6/10 Contig "Institute for Applied Microbiology, University of Natural Ressources and Applied Life Sciences, Vienna, Austria" -
Saccharomyces pastorianus CCY48 - 91 1214527 PRJNA169496 169496 Fungi Ascomycetes 24.2085 41.6 GCA_000287895.1 - - - ALJS01 2425 - - 2012/8/15 2012/8/15 Contig Institute of Chemical Technology Prague -
Saccharomyces pastorianus Weihenstephan 34/70 520522 PRJNA29791 29791 Fungi Ascomycetes 22.3821 39.2 GCA_000182115.1 - - - ABPO01 3566 - - 2009/3/11 2009/3/11 Contig SUNTORY LIMITED (Japan) -
Candida dubliniensis CD36 573826 PRJEA34697 34697 Fungi Ascomycetes 14.6184 33.2489 GCA_000026945.1 8 - - - 8 6095 5860 2009/2/16 2010/1/31 Gapless Chromosome Wellcome Trust Sanger Institute -
Vanderwaltozyma polyspora DSM 70294 436907 PRJNA19237 19237 Fungi Ascomycetes 14.6746 33 GCA_000150035.1 - - - AAZN01 281 5767 5367 2007/4/25 2009/8/26 Scaffold "Trinity College Dublin, Ireland" -
Candida parapsilosis CDC317 578454 PRJEA32889 32889 Fungi Ascomycetes 13.0785 38.7 GCA_000182765.1 - - - CABE01 24 - - 2008/12/14 2009/6/24 Contig Wellcome Trust Sanger Institute -
Candida tenuis ATCC 10573 590646 PRJNA33673 33673 Fungi Ascomycetes 10.747 42.9 GCA_000223465.1 - - - AEIM01 25 5547 6985 2011/8/16 2014/1/23 Scaffold DOE Joint Genome Institute -
Zygosaccharomyces bailii CLIB 213 1333698 PRJEB1908 211734 Fungi Ascomycetes 10.2688 42.5 GCA_000442885.1 - - - - 27 5244 4723 - - Scaffold INRAMONTPELLIER -
Kluyveromyces aestuarii ATCC 18862 854826 PRJNA49737 49737 Fungi Ascomycetes 9.91011 38.3 GCA_000179355.1 - - - AEAS01 336 - - 2010/7/14 2011/5/19 Contig "University of California, SF" -
Kluyveromyces wickerhamii UCD 54-210 861556 PRJNA50387 50387 Fungi Ascomycetes 9.80774 40.9 GCA_000179415.1 - - - AEAV01 510 - - 2010/7/14 2011/5/19 Contig UCSF -
Wickerhamomyces anomalus NRRL Y-366 885923 PRJNA52059 52059 Fungi Ascomycetes 26.555 34 GCA_000147375.2 - - - AEGI02 1932 - - 2010/9/15 2011/9/9 Scaffold "Bielefeld University, CeBiTec" -
Spathaspora passalidarum NRRL Y-27907 619300 PRJNA53891 53891 Fungi Ascomycetes 13.1821 37.4 GCA_000223485.1 - - - AEIK01 8 5983 5983 2011/8/16 2014/3/26 Scaffold DOE Joint Genome Institute -
Pachysolen tannophilus NRRL Y-2460 669874 PRJEA85615 85615 Fungi Ascomycetes 12.2379 29.8 GCA_000313505.1 - - - CAHV01 267 - - 2012/5/15 2012/5/15 Contig "Technical University of Denmark, Dept. of Systems Biology" -
Kluyveromyces marxianus var. marxianus KCTC 17555 1162310 PRJNA89605 89605 Fungi Ascomycetes 10.9268 40.1 GCA_000299195.1 - - - AKFM01 100 - - 2012/9/24 2012/12/26 Scaffold KRIBB -
Eremothecium cymbalariae DBVPG#7215 931890 PRJNA60715 60715 Fungi Ascomycetes 9.66942 40.3222 GCA_000235365.1 8 - - - 8 4853 4434 2011/11/14 2011/12/19 Chromosome with gaps Carlsberg Laboratory -
Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 1095631 PRJNA73971 73971 Fungi Ascomycetes 23.3715 39 GCA_000326105.1 - - 1 AGVY01 419 10732 9147 2011/12/23 2011/12/23 Contig The Australian Wine Research Institute -
Dekkera bruxellensis CBS 2499 747657 PRJNA76499 76499 Fungi Ascomycetes 13.3559 40 GCA_000340765.1 - - - AHMD01 63 - - 2013/2/15 2013/2/20 Scaffold JGI -
Dekkera bruxellensis AWRI1499 1124627 PRJNA78661 78661 Fungi Ascomycetes 12.6765 39.9 GCA_000259595.1 - - - AHIQ01 324 4966 4861 2012/4/27 2012/4/27 Contig The Australian Wine Research Institute -
Naumovozyma dairenensis CBS 421 1071378 PRJEA70961 70961 Fungi Ascomycetes 13.5276 34.1768 GCA_000227115.2 11 - - - 11 5816 5548 2011/8/16 2012/5/11 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Tetrapisispora phaffii CBS 4417 1071381 PRJEA70965 70965 Fungi Ascomycetes 12.1151 33.5732 GCA_000236905.1 16 - - - 17 5463 5253 2011/11/17 2013/2/5 Chromosome "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Torulaspora delbrueckii 4950 PRJEA70971 70971 Fungi Ascomycetes 9.22068 42.0369 GCA_000243375.1 8 - - - 8 5176 4972 2011/12/8 2013/2/5 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Tetrapisispora blattae CBS 6284 1071380 PRJEA70963 70963 Fungi Ascomycetes 14.0486 31.7378 GCA_000315915.1 10 - - - 10 5725 5388 2012/5/11 2013/2/5 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Kazachstania africana CBS 2517 1071382 PRJEA70967 70967 Fungi Ascomycetes 11.1301 36.3068 GCA_000304475.1 12 - - - 12 5649 5378 2012/1/17 2013/2/5 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Kazachstania naganishii CBS 8797 1071383 PRJEA70969 70969 Fungi Ascomycetes 10.8458 45.8879 GCA_000348985.1 13 - - - 13 5488 5321 2012/9/3 2013/2/5 Chromosome with gaps "Wolfe Laboratory, Smurfit Institute of Genetics, Trinity College Dublin, Ireland" -
Candida orthopsilosis 273371 PRJEA172256 172256 Fungi Ascomycetes 12.6594 37.6081 GCA_000315875.1 8 - - - 8 5785 5677 2012/3/14 2013/2/12 Chromosome with gaps NCBI -
Candida orthopsilosis AY2 1213353 PRJNA171019 171019 Fungi Ascomycetes 14.5117 37.3 GCA_000304155.1 - - - AMDC01 - - - 2012/10/9 2012/10/9 Contig Universiti Teknologi Malaysia -
Saccharomyces arboricola H-6 1160507 PRJNA88533 88533 Fungi Ascomycetes 11.6195 38.8434 GCA_000292725.1 16 1 - ALIE01 35 3732 3651 2012/8/16 2012/9/11 Chromosome The University of Nottingham -
Cyberlindnera jadinii NBRC 0988 1128122 PRJDB26 167219 Fungi Ascomycetes 14.2753 44.6813 GCA_000328385.1 13 - - BAEL01 1002 - - 2012/5/22 2012/5/22 Chromosome "KIRIN Holdings Company, Ltd." -
Metschnikowia fructicola 277 1200864 PRJNA179032 179032 Fungi Ascomycetes 24.4822 45.5 GCA_000317355.1 - - - ANFW01 - - - 2012/12/5 2013/3/29 Contig Agricultural Research Organisation SAMN01797239
Wickerhamomyces ciferrii 1041607 PRJEB29 169887 Fungi Ascomycetes 15.9012 30.4 GCA_000313485.1 - - - CAIF01 364 6702 6702 2012/9/13 2012/9/13 Contig Center for Biotechnology -
Pichia kudriavzevii M12 1213351 PRJNA171021 171021 Fungi Ascomycetes 10.4485 38.3 GCA_000286515.1 - - - ALNQ01 621 - - 2012/8/10 2012/10/5 Contig Universiti Teknologi Malaysia -
Candida maltosa Xu316 1245528 PRJNA184737 184737 Fungi Ascomycetes 12.8263 34.2 GCA_000344705.1 - - - AOGT01 2947 5986 5986 2013/3/6 2013/3/6 Contig "Tianjin Institute of Industrial Biotechnology,Chinese Academy of Science" -
Saccharomyces boulardii EDRL 1343043 PRJNA207020 207020 Fungi Ascomycetes 11.483 38.3 GCA_000442675.1 - - - ATCS01 194 - - 2013/8/1 2013/12/5 Contig Institute of Microbial Technology -
Saccharomycetaceae sp. 'Ashbya aceri' 566037 PRJNA39551 39551 Fungi Ascomycetes 8.86753 51.2811 GCA_000412225.1 7 - - - 7 4657 4479 2013/6/18 2013/6/25 Gapless Chromosome "Duke University, Molecular Genetics and Microbiology" -
Candida glabrata CCTCC M202019 1406948 PRJNA222546 222546 Fungi Ascomycetes 12.1169 38.5 GCA_000497105.1 - - - AYJS01 97 - - 2013/11/15 2013/11/18 Scaffold Jiangnan University -
Spathaspora arborariae UFMG-19.1A 1343157 PRJNA207280 207280 Fungi Ascomycetes 12.8706 31.7 GCA_000497715.1 - - - AYLH01 41 - - 2013/11/20 2014/3/5 Scaffold Universidade Federal de Santa Catarina -
Saccharomyces cerevisiae NAM34-4C 1352823 PRJDB1381 231437 Fungi Ascomycetes 11.5537 38.1 GCA_000508805.1 - - - BAUH01 154 - - 2013/12/11 2014/3/8 Contig National Institute of Advanced Industrial Science and Technology -
Saccharomyces cerevisiae IR-2 1352824 PRJDB1382 231438 Fungi Ascomycetes 11.4416 38.2 GCA_000508825.1 - - - BAUI01 322 - - 2013/12/11 2014/3/8 Contig National Institute of Advanced Industrial Science and Technology -
Ogataea parapolymorpha DL-1 871575 PRJNA60503 60503 Fungi Ascomycetes 8.87459 47.8343 GCA_000187245.3 7 - - AEOI02 7 5408 5325 2011/1/31 2013/12/20 Chromosome Centre -
Zygosaccharomyces bailii ISA1307 1355161 0 Fungi Ascomycetes 21.1411 42.4 GCA_000530735.1 - - - CBTC01 154 10442 9925 2014/1/23 2014/2/15 Contig - -
Debaryomyces hansenii CBS767 284592 PRJNA13832 13832 Fungi Ascomycetes 12.1819 36.3369 GCA_000006445.2 7 1 - - 8 6658 6290 2004/7/3 2012/2/29 Chromosome with gaps Genolevures Consortium -
Saccharomyces cerevisiae P283 1177187 PRJNA161093 161093 Fungi Ascomycetes 11.4081 38.4921 GCA_000568295.1 16 - - AOJC01 34 5266 4400 2013/12/31 2014/2/18 Chromosome University of Padova -
Kuraishia capsulata CBS 1993 1382522 0 Fungi Ascomycetes 11.3712 45.6 GCA_000576695.1 - - - CBUD02 7 6029 6029 2014/1/29 2014/1/29 Scaffold - -
Saccharomyces cerevisiae YJSH1 1087981 PRJNA72403 72403 Fungi Ascomycetes 11.5505 38.3199 GCA_000275665.1 16 - - AGAW01 17 - - 2012/7/2 2013/11/12 Chromosome Zhejiang University -
Yarrowia lipolytica Po1f 1445506 PRJNA233955 233955 Fungi Ascomycetes 20.283 49 GCA_000590845.1 - - - JAFI01 783 - - 2014/3/13 2014/3/13 Contig University of Texas at Austin -
Saccharomyces pastorianus Weihenstephan 34/70 520522 PRJNA229845 229845 Fungi Ascomycetes 22.9627 39 GCA_000586535.1 - - - AZAA01 1358 - - 2014/3/10 2014/3/10 Contig Carlsberg Laboratory -
Saccharomyces carlsbergensis CBS 1513 1073566 PRJNA71341 71341 Fungi Ascomycetes 19.3677 39.3 GCA_000586595.1 - - - AZCJ01 77 - - 2014/3/11 2014/3/11 Contig Carlsberg Laboratory -
Yarrowia lipolytica WSH-Z06 1437815 0 Fungi Ascomycetes 20.0906 49.0971 GCA_000613145.1 6 - - - 6 - - 2014/3/10 2014/3/10 Gapless Chromosome - -
Candida dubliniensis 42374 PRJNA221141 221141 Fungi Ascomycetes 14.0449 33.1 GCA_000647555.1 - - - JFFX01 778 - - 2014/4/23 2014/4/23 Contig University of Birmingham SAMN02593544
Candida dubliniensis 42374 PRJNA221141 221141 Fungi Ascomycetes 13.9982 33.1 GCA_000647575.1 - - - JFFY01 892 - - 2014/4/23 2014/4/23 Contig University of Birmingham SAMN02593545
Saccharomyces cerevisiae R008 1182966 PRJNA162713 162713 Fungi Ascomycetes 11.6014 38.4316 GCA_000568005.1 16 1 1 APIP01 32 6074 5222 2013/12/31 2014/2/26 Chromosome University of Padova SAMN01915092
Saccharomyces cerevisiae P301 1182968 PRJNA162717 162717 Fungi Ascomycetes 11.4871 38.4898 GCA_000568055.1 16 - - APIQ01 41 5906 4629 2013/12/31 2014/2/26 Chromosome University of Padova SAMN01915094
Saccharomyces cerevisiae YJM993 1294331 PRJNA189879 189879 Fungi Ascomycetes 12.502 38.5258 GCA_000662435.1 16 1 1 - 18 6961 5471 2014/5/1 2014/5/1 Chromosome with gaps Duke University SAMN01923145
Candida tropicalis 5482 PRJNA238598 238598 Fungi Ascomycetes 15.3268 33.1 GCA_000633855.1 - - - JGYC01 150 - - 2014/4/18 2014/5/1 Scaffold Nanjing Tech University SAMN02650963
Dekkera bruxellensis LAMAP2480 1436216 PRJNA231184 231184 Fungi Ascomycetes 26.9938 40 GCA_000688595.1 - - - AZMW01 - - - 2014/3/13 2014/3/13 Contig Fraunhofer Chile Research Center for Systems Biotechnology -
Hanseniaspora vineae 56409 PRJNA238564 238564 Fungi Ascomycetes 11.3833 37.4 GCA_000585475.2 - - - JFAV02 305 - - 2014/3/4 2014/5/6 Contig Facultad de Ciencias SAMN02644989
Candida albicans Ca529L 1325634 PRJNA200311 200311 Fungi Ascomycetes 14.6713 33.5 GCA_000691765.1 - - - ASHC01 87 - - 2014/5/15 2014/5/15 Scaffold Broad Institute SAMN02058435
Ajellomyces capsulatus G186AR 447093 PRJNA12635 12635 Fungi Ascomycetes 30.4833 44.5 GCA_000150115.1 - - - ABBS02 88 9364 9254 2007/8/31 2009/3/23 Scaffold WashU -
Ajellomyces capsulatus G217B 447094 PRJNA12653 12653 Fungi Ascomycetes 41.2859 42.7 GCA_000170615.1 - - - ABBT01 266 - - 2007/12/14 2007/12/14 Contig WashU -
Ajellomyces capsulatus H143 544712 PRJNA29161 29161 Fungi Ascomycetes 38.9617 41.7 GCA_000151035.1 - - - ABRK01 49 9796 9547 2009/6/1 2009/6/19 Scaffold Broad Institute -
Ajellomyces capsulatus H88 544711 PRJNA29163 29163 Fungi Ascomycetes 37.9432 42 GCA_000151005.2 - - - ABRJ01 17 9666 9445 2008/9/5 2011/3/2 Scaffold Broad Institute -
Ajellomyces capsulatus NAm1 339724 PRJNA12654 12654 Fungi Ascomycetes 33.0303 46.1 GCA_000149585.1 - - - AAJI01 280 9402 9313 2005/9/19 2009/8/10 Scaffold Broad Institute -
Ajellomyces dermatitidis ATCC 18187 946394 PRJNA61999 61999 Fungi Ascomycetes 61.1344 37.9 GCA_000301155.1 - - - AJJV01 29569 - - 2012/10/1 2012/10/11 Scaffold Broad Institute -
Ajellomyces dermatitidis ATCC 18188 653446 PRJNA39265 39265 Fungi Ascomycetes 73.6338 36.7 GCA_000151595.1 - - - ADMK01 4160 10397 10089 2010/3/24 2011/3/31 Scaffold Broad Institute -
Ajellomyces dermatitidis ATCC 26199 447095 PRJNA39263 39263 Fungi Ascomycetes 71.5153 36.6 GCA_000166155.1 - - - AEII01 3282 9560 11211 2010/11/5 2013/8/20 Scaffold Broad Institute -
Ajellomyces dermatitidis ER-3 559297 PRJNA29171 29171 Fungi Ascomycetes 66.6087 37.1 GCA_000003525.2 - - - ACBT01 27 9865 9539 2009/2/19 2009/6/9 Scaffold Broad Institute -
Ajellomyces dermatitidis SLH14081 559298 PRJNA29173 29173 Fungi Ascomycetes 75.4047 35.7 GCA_000003855.2 - - - ACBU01 103 10047 9587 2009/2/19 2009/10/9 Scaffold Broad Institute -
Arthroderma benhamiae CBS 112371 663331 PRJNA30573 30573 Fungi Ascomycetes 22.2242 48.7 GCA_000151125.2 - - - ABSU01 68 8041 7980 2010/3/17 2010/8/10 Scaffold Arthroderma Genome Sequencing Consortium -
Arthroderma gypseum CBS 118893 535722 PRJNA20599 20599 Fungi Ascomycetes 23.2682 48.5 GCA_000150975.1 - - - ABQE01 19 9015 8907 2008/7/25 2010/12/14 Scaffold Broad Institute -
Arthroderma otae CBS 113480 554155 PRJNA30939 30939 Fungi Ascomycetes 23.2631 47.5 GCA_000151145.1 - - - ABVF01 17 8847 8765 2008/10/15 2010/5/25 Scaffold Broad Institute -
Ascosphaera apis ARSEF 7405 392613 PRJNA17285 17285 Fungi Ascomycetes 21.5221 47.6 GCA_000149775.1 - - - AARE01 1667 - - 2006/7/6 2009/5/22 Scaffold Baylor College of Medicine -
Aspergillus clavatus NRRL 1 344612 PRJNA15664 15664 Fungi Ascomycetes 27.8594 49.2 GCA_000002715.1 - - - AAKD03 143 9379 9121 2005/9/9 2011/7/5 Scaffold J. Craig Venter Institute -
Aspergillus flavus NRRL3357 332952 PRJNA13284 13284 Fungi Ascomycetes 36.8923 48.4 GCA_000006275.2 - - - AAIH02 331 13485 13485 2005/8/1 2010/9/3 Scaffold J. Craig Venter Institute -
Aspergillus fumigatus A1163 451804 PRJNA18733 18733 Fungi Ascomycetes 29.2054 49.5 GCA_000150145.1 - - - ABDB01 55 10124 9929 2007/6/26 2008/4/18 Scaffold J. Craig Venter Institute -
Aspergillus fumigatus Af10 1035095 PRJNA46347 46347 Fungi Ascomycetes 28.7591 49.5 GCA_000225625.2 - - - AFXL01 1129 - - 2011/9/9 2011/9/9 Contig JCVI -
Aspergillus fumigatus AF210 888744 PRJNA52783 52783 Fungi Ascomycetes 28.9028 49.3 GCA_000225645.2 - - - AFXM01 447 - - 2011/9/9 2011/9/9 Contig JCVI -
Aspergillus fumigatus Af293 330879 PRJNA131 131 Fungi Ascomycetes 29.385 49.8207 GCA_000002655.1 8 - - AAHF01 8 9916 9630 2005/6/1 2009/11/11 Chromosome J. Craig Venter Institute -
Aspergillus kawachii IFO 4308 1033177 PRJDA66971 66971 Fungi Ascomycetes 37.1132 49 GCA_000239835.2 - 1 - BACL01 1163 11472 11475 2011/10/27 2011/11/18 Scaffold "University of Kyushu, Department of Bioscience and Biotechnology" -
Aspergillus nidulans FGSC A4 227321 PRJNA130 130 Fungi Ascomycetes 30.2427 50.3 GCA_000149205.1 - - - AACD01 90 9545 9541 2003/4/7 2012/3/26 Scaffold Broad Institute -
Aspergillus nidulans FGSC A4 227321 PRJEA40559 40559 Fungi Ascomycetes 29.8283 50.37 GCA_000011425.1 8 - - - 8 10597 10534 2009/9/24 2009/10/2 Chromosome with gaps Eurofungbase (Eurofung) -
Aspergillus niger ATCC 1015 380704 PRJNA15785 15785 Fungi Ascomycetes 34.8533 50.3 GCA_000230395.2 - - - ACJE01 24 10947 10950 2011/10/12 2011/10/12 Contig DOE Joint Genome Institute -
Aspergillus niger HBR18 1445556 0 Fungi Ascomycetes 32.8415 51.2 GCA_000530345.1 - - - CBWZ01 - - - 2014/2/2 2014/2/2 Contig - -
Aspergillus niger SH-2 1316740 PRJNA196564 196564 Fungi Ascomycetes 34.6043 50.3 GCA_000633045.1 - - - AUZU01 349 - - 2014/4/17 2014/4/17 Scaffold South China University of Technology SAMN02729333
Aspergillus oryzae 100-8 1197718 PRJNA168079 168079 Fungi Ascomycetes 36.7693 - GCA_000691885.1 - - - AMCJ01 210 - - - - Contig Tianjin University of Science & Technology SAMN02782205
Aspergillus oryzae 3.042 1160506 PRJNA88495 88495 Fungi Ascomycetes 36.5765 48.2824 GCA_000269785.2 - 1 - AKHY01 226 11640 11397 2012/6/18 2012/9/12 Contig Tianjin University of Science & Technology -
Aspergillus oryzae AS 3.863 1167532 PRJNA138081 138081 Fungi Ascomycetes 36.4076 48.3 GCA_000278425.1 - - - AKXL01 962 - - 2012/7/16 2012/7/16 Contig South China University of Technology -
Aspergillus oryzae AS 3.951 1163405 PRJNA89727 89727 Fungi Ascomycetes 36.3336 48.3 GCA_000278405.1 - - - AKXN01 969 - - 2012/7/16 2012/7/16 Contig South China University of Technology -
Aspergillus oryzae HBR9 1445555 0 Fungi Ascomycetes 35.2805 49.2 GCA_000531055.1 - - - CBWY01 4209 - - 2014/2/2 2014/2/2 Contig - -
Aspergillus oryzae RIB326 1146887 PRJDB45 170976 Fungi Ascomycetes 35.4264 48.4 GCA_000320905.1 - - - BAEZ01 200 - - 2012/7/19 2012/7/19 Contig National Institute of Advanced Industrial Science and Technology (AIST) -
Aspergillus ruber CBS 135680 1388766 PRJNA215335 215335 Fungi Ascomycetes 26.2093 48.8 GCA_000600275.1 - - - AWRT01 110 10241 10066 2014/3/25 2014/3/27 Scaffold DOE Joint Genome Institute -
Aspergillus sojae NBRC 4239 927772 PRJDA60265 60265 Fungi Ascomycetes 39.771 48.1 GCA_000226655.1 - - - BACA01 542 - - 2011/6/14 2011/6/14 Scaffold Kikkoman Corporation -
Aspergillus terreus ATCC 20542 285217 PRJNA187 187 Fungi Ascomycetes 0.13852 53.6 GCA_000166915.1 - - - AABT01 175 - - 2002/12/19 2007/1/17 Contig Microbia -
Aspergillus terreus NIH2624 341663 PRJNA15631 15631 Fungi Ascomycetes 29.364 52.9 GCA_000149615.1 - - - AAJN01 27 10551 10401 2005/9/9 2009/8/26 Scaffold Broad Institute -
Byssochlamys spectabilis No. 5 1356009 PRJDB1394 227278 Fungi Ascomycetes 29.7624 48.6 GCA_000497085.1 - - - BAUL01 1053 8877 8877 2013/11/11 2014/3/12 Contig Sojo University -
Candida albicans 3153A 1182531 PRJNA165021 165021 Fungi Ascomycetes 14.89 33.3 GCA_000447595.1 - - - AVAY01 100 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A123 1182537 PRJNA165033 165033 Fungi Ascomycetes 14.638 33.3 GCA_000447455.1 - - - AVAR01 75 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A155 1182538 PRJNA165035 165035 Fungi Ascomycetes 14.4651 33.4 GCA_000447615.1 - - - AVAZ01 84 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A20 1182533 PRJNA165025 165025 Fungi Ascomycetes 14.553 33.4 GCA_000447575.1 - - - AVAX01 71 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A203 1182540 PRJNA165039 165039 Fungi Ascomycetes 14.7854 33.4 GCA_000447495.1 - - - AVAT01 50 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A48 1182534 PRJNA165027 165027 Fungi Ascomycetes 14.7 33.3 GCA_000447535.1 - - - AVAV01 87 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A67 1182535 PRJNA165029 165029 Fungi Ascomycetes 14.6882 33.4 GCA_000447515.1 - - - AVAU01 64 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A84 1182539 PRJNA165037 165037 Fungi Ascomycetes 14.6916 33.3 GCA_000447635.1 - - - AVBA01 86 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans A92 1182536 PRJNA165031 165031 Fungi Ascomycetes 14.6074 33.4 GCA_000447475.1 - - - AVAS01 54 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans Ca529L 1325634 PRJNA200311 200311 Fungi Ascomycetes 14.6713 33.5 GCA_000691765.1 - - - ASHC01 87 - - 2014/5/15 2014/5/15 Scaffold Broad Institute SAMN02058435
Candida albicans CHN1 1182532 PRJNA165023 165023 Fungi Ascomycetes 14.7275 33.3 GCA_000447555.1 - - - AVAW01 84 - - 2013/8/15 2013/8/15 Scaffold Broad Institute -
Candida albicans SC5314 237561 PRJNA10701 10701 Fungi Ascomycetes 27.5589 33.4 GCA_000182965.2 - - - AACQ01 413 14217 14217 2004/4/21 2009/11/10 Contig Stanford University -
Candida albicans WO-1 294748 PRJNA16373 16373 Fungi Ascomycetes 14.473 33.6111 GCA_000149445.2 5 - - AAFO01 17 2983 2815 2006/3/28 2009/6/10 Chromosome Broad Institute -
Candida dubliniensis 42374 PRJNA221141 221141 Fungi Ascomycetes 14.0449 33.1 GCA_000647555.1 - - - JFFX01 778 - - 2014/4/23 2014/4/23 Contig University of Birmingham SAMN02593544
Candida dubliniensis 42374 PRJNA221141 221141 Fungi Ascomycetes 13.9982 33.1 GCA_000647575.1 - - - JFFY01 892 - - 2014/4/23 2014/4/23 Contig University of Birmingham SAMN02593545
Candida dubliniensis CD36 573826 PRJEA34697 34697 Fungi Ascomycetes 14.6184 33.2489 GCA_000026945.1 8 - - - 8 6095 5860 2009/2/16 2010/1/31 Gapless Chromosome Wellcome Trust Sanger Institute -
Candida glabrata 5478 PRJNA13831 13831 Fungi Ascomycetes 12.3383 38.6198 GCA_000002545.2 13 1 - - 14 5499 5213 2004/6/30 2010/12/23 Chromosome with gaps Genolevures Consortium -
Candida glabrata CCTCC M202019 1406948 PRJNA222546 222546 Fungi Ascomycetes 12.1169 38.5 GCA_000497105.1 - - - AYJS01 97 - - 2013/11/15 2013/11/18 Scaffold Jiangnan University -
Candida maltosa Xu316 1245528 PRJNA184737 184737 Fungi Ascomycetes 12.8263 34.2 GCA_000344705.1 - - - AOGT01 2947 5986 5986 2013/3/6 2013/3/6 Contig "Tianjin Institute of Industrial Biotechnology,Chinese Academy of Science" -
Candida orthopsilosis 273371 PRJEA172256 172256 Fungi Ascomycetes 12.6594 37.6081 GCA_000315875.1 8 - - - 8 5785 5677 2012/3/14 2013/2/12 Chromosome with gaps NCBI -
Candida orthopsilosis AY2 1213353 PRJNA171019 171019 Fungi Ascomycetes 14.5117 37.3 GCA_000304155.1 - - - AMDC01 - - - 2012/10/9 2012/10/9 Contig Universiti Teknologi Malaysia -
Candida parapsilosis CDC317 578454 PRJEA32889 32889 Fungi Ascomycetes 13.0785 38.7 GCA_000182765.1 - - - CABE01 24 - - 2008/12/14 2009/6/24 Contig Wellcome Trust Sanger Institute -
Candida tenuis ATCC 10573 590646 PRJNA33673 33673 Fungi Ascomycetes 10.747 42.9 GCA_000223465.1 - - - AEIM01 25 5547 6985 2011/8/16 2014/1/23 Scaffold DOE Joint Genome Institute -
Candida tropicalis 5482 PRJNA238598 238598 Fungi Ascomycetes 15.3268 33.1 GCA_000633855.1 - - - JGYC01 150 - - 2014/4/18 2014/5/1 Scaffold Nanjing Tech University SAMN02650963
Candida tropicalis MYA-3404 294747 PRJNA13675 13675 Fungi Ascomycetes 14.6301 33.2 GCA_000006335.2 - - - AAFN02 24 6441 6254 2005/3/16 2010/6/15 Scaffold Broad Institute -
Capronia coronata CBS 617.96 1182541 PRJNA164585 164585 Fungi Ascomycetes 25.8076 52.8 GCA_000585585.1 - - - AMWN01 11 9231 9231 2014/3/5 2014/3/5 Contig Broad Institute SAMN00974099
Capronia epimyces CBS 606.96 1182542 PRJNA164587 164587 Fungi Ascomycetes 28.8896 53.4 GCA_000585565.1 - - - AMGY01 18 10469 10469 2014/3/5 2014/3/5 Contig Broad Institute SAMN00974100
Cladophialophora carrionii CBS 160.54 1279043 PRJNA185784 185784 Fungi Ascomycetes 28.9911 54.3 GCA_000365165.2 - - - AOFF01 19 10428 10373 2013/4/15 2013/12/11 Scaffold Broad Institute SAMN01919308
Cladophialophora psammophila CBS 110553 1182543 PRJNA164589 164589 Fungi Ascomycetes 39.4201 50.6 GCA_000585535.1 - - - AMGX01 123 13421 13421 2014/3/5 2014/3/5 Contig Broad Institute SAMN00974101
Cladophialophora yegresii CBS 114405 1182544 PRJNA164591 164591 Fungi Ascomycetes 27.8984 54 GCA_000585515.1 - - - AMGW01 8 10118 10118 2014/3/5 2014/3/5 Contig Broad Institute SAMN00974102
Coccidioides immitis H538.4 396776 PRJNA17355 17355 Fungi Ascomycetes 27.7811 46.9 GCA_000149815.1 - - - AASO01 556 - - 2006/9/22 2007/1/17 Scaffold Broad Institute -
Coccidioides immitis RMSCC 2394 404692 PRJNA17713 17713 Fungi Ascomycetes 28.9084 46.2 GCA_000149895.1 - - - AATX01 31 - - 2006/11/2 2007/1/17 Scaffold Broad Institute -
Coccidioides immitis RMSCC 3703 454286 PRJNA17761 17761 Fungi Ascomycetes 27.7088 47 GCA_000150085.1 - - - ABBC01 289 - - 2007/7/12 2007/7/18 Scaffold Broad Institute -
Coccidioides immitis RS 246410 PRJNA12883 12883 Fungi Ascomycetes 28.9579 46 GCA_000149335.1 - - - AAEC02 10 10560 10440 2004/10/4 2012/6/26 Scaffold Broad Institute -
Coccidioides posadasii C735 delta SOWgp 222929 PRJNA9616 9616 Fungi Ascomycetes 27.0134 46.6 GCA_000151335.1 - - - ACFW01 55 7255 7229 2009/6/17 2010/8/17 Scaffold TIGR-J. Craig Venter Institute -
Coccidioides posadasii CPA 0001 469472 PRJNA17793 17793 Fungi Ascomycetes 28.6933 46 GCA_000150245.1 - - - ABFO01 256 - - 2007/11/8 2007/11/19 Scaffold Broad Institute -
Coccidioides posadasii CPA 0020 490068 PRJNA17795 17795 Fungi Ascomycetes 27.3473 46.8 GCA_000150615.1 - - - ABIV01 624 - - 2008/1/28 2008/1/30 Scaffold Broad Institute -
Coccidioides posadasii CPA 0066 490069 PRJNA17797 17797 Fungi Ascomycetes 27.7909 46.3 GCA_000150645.1 - - - ABIW01 475 - - 2008/2/6 2008/2/7 Scaffold Broad Institute -
Coccidioides posadasii RMSCC 1037 490065 PRJNA17791 17791 Fungi Ascomycetes 26.6594 46.8 GCA_000150555.1 - - - ABIS01 635 - - 2008/1/28 2008/1/30 Scaffold Broad Institute -
Coccidioides posadasii RMSCC 1038 490066 PRJNA17785 17785 Fungi Ascomycetes 26.1759 47.1 GCA_000150585.1 - - - ABIT01 554 - - 2008/1/28 2008/1/30 Scaffold Broad Institute -
Coccidioides posadasii RMSCC 2133 469470 PRJNA17763 17763 Fungi Ascomycetes 27.9191 47 GCA_000150185.1 - - - ABFM01 55 - - 2007/11/8 2007/11/19 Scaffold Broad Institute -
Coccidioides posadasii RMSCC 3488 454284 PRJNA17783 17783 Fungi Ascomycetes 28.2111 46.3 GCA_000150055.1 - - - ABBB01 9 - - 2007/7/12 2007/7/18 Scaffold Broad Institute -
Coccidioides posadasii RMSCC 3700 469471 PRJNA17781 17781 Fungi Ascomycetes 25.4862 48.1 GCA_000150215.1 - - - ABFN01 243 - - 2007/11/16 2007/11/19 Scaffold Broad Institute -
Coccidioides posadasii str. Silveira 443226 PRJNA17787 17787 Fungi Ascomycetes 27.5832 46.6 GCA_000170175.2 - - - ABAI02 54 10379 10228 2007/5/31 2011/1/25 Scaffold Coccidioides Genome Resources Consortium; The Broad Institute Genome Sequencing Platform -
Coniosporium apollinis CBS 352.97 1168221 PRJNA157061 157061 Fungi Ascomycetes 28.6453 52.1 GCA_000281105.1 - - - AJKL01 169 9367 9308 2012/7/24 2013/5/9 Scaffold Broad Institute -
Endocarpon pusillum 364733 PRJNA239193 239193 Fungi Ascomycetes 37.1732 49.7 GCA_000611755.1 - - - JFDM01 40 - - 2014/3/31 2014/4/2 Scaffold Seoul National University SAMN02650299
Endocarpon pusillum Z07020 1263415 PRJNA181958 181958 Fungi Ascomycetes 37.1306 46 GCA_000464535.1 - - - APWS01 908 20923 20923 2013/9/4 2014/5/5 Scaffold chinese academy of science -
Exophiala dermatitidis NIH/UT8656 858893 PRJNA64935 64935 Fungi Ascomycetes 26.3768 51.5 GCA_000230625.1 - 1 - AFPA01 11 9315 9562 2011/10/14 2012/2/27 Scaffold Broad Institute -
Geomyces destructans 20631-21 658429 PRJNA39257 39257 Fungi Ascomycetes 30.6849 50 GCA_000184105.1 - 1 - AEFC01 1847 9225 9153 2010/12/2 2011/1/7 Scaffold Broad Institute -
Geomyces pannorum var. pannorum M1372 1414444 PRJNA225336 225336 Fungi Ascomycetes 29.4559 50.5 GCA_000497305.1 - - - AYKR01 971 - - 2013/11/18 2013/12/26 Contig "Institute for Genome Sciences, University of Maryland School of Medicine" -
Herpotrichiellaceae sp. UM238 1240657 PRJNA176958 176958 Fungi Ascomycetes 28.3643 49.8 GCA_000315175.1 - - - AMYF01 217 - - 2012/11/26 2013/3/11 Contig UNIVERSITY OF MALAYA -
Neosartorya fischeri NRRL 181 331117 PRJNA15672 15672 Fungi Ascomycetes 31.77 49.4 GCA_000149645.2 - - - AAKE03 438 10678 10395 2005/9/9 2011/7/5 Scaffold TIGR -
Paracoccidioides brasiliensis Pb03 482561 PRJNA27779 27779 Fungi Ascomycetes 29.0889 44.5 GCA_000150475.1 - - - ABHV01 70 7979 7876 2007/11/28 2011/11/3 Scaffold Broad Institute -
Paracoccidioides brasiliensis Pb18 502780 PRJNA28733 28733 Fungi Ascomycetes 29.9956 44.3 GCA_000150735.1 - - - ABKI01 61 8844 8741 2008/3/20 2011/11/3 Scaffold Broad Institute -
Paracoccidioides sp. 'lutzii' Pb01 502779 PRJNA28731 28731 Fungi Ascomycetes 32.9742 42.8 GCA_000150705.1 - - - ABKH01 114 9250 9136 2008/3/20 2012/1/23 Scaffold Broad Institute -
Penicillium aurantiogriseum NRRL 62431 1208580 PRJNA170336 170336 Fungi Ascomycetes 31.5475 48.5 GCA_000584915.1 - - - ALJY01 - - - 2014/3/3 2014/3/3 Contig Murdoch University -
Penicillium biforme FM169 1439349 0 Fungi Ascomycetes 34.8746 - GCA_000577785.1 - - - CBXO01 582 - - - - Scaffold - -
Penicillium camemberti FM 013 1429867 0 Fungi Ascomycetes 35.012 48.2 GCA_000513335.1 - - - CBVV01 180 - - 2013/12/4 2014/3/7 Scaffold - -
Penicillium carneum LCP05634 1439351 0 Fungi Ascomycetes 25.9366 - GCA_000577495.1 - - - CBXS01 2090 - - - - Scaffold - -
Penicillium chrysogenum NCPC10086 1297591 PRJNA190642 190642 Fungi Ascomycetes 32.3034 48.9 GCA_000523475.1 - - - APKG01 175 - - 2014/1/27 2014/1/27 Scaffold New Drug R&D Center of North China Pharmaceutical Corporation and National Engineering Research Center for Microbial Medicine -
Penicillium chrysogenum Wisconsin 54-1255 500485 PRJEA27927 27927 Fungi Ascomycetes 32.2237 48.9 GCA_000226395.1 - - - - 49 11471 10512 - - Scaffold "DSM Anti-Infectives, The Netherlands" -
Penicillium decumbens 114-2 933388 PRJNA60877 60877 Fungi Ascomycetes 30.1774 50.7 GCA_000346795.1 - - - AGIH01 9 10013 9979 2013/3/15 2013/7/22 Scaffold "State Key Laboratory of Microbial Technology, Shandong University" -
Penicillium digitatum Pd01-ZJU 1254403 PRJNA178915 178915 Fungi Ascomycetes 25.0111 48.9 GCA_000485865.1 - - - ANGJ01 1816 - - 2013/10/29 2013/10/29 Contig Institute of developmentive and regenerative biology -
Penicillium digitatum Pd1 1170230 PRJNA157543 157543 Fungi Ascomycetes 26.0821 48.9 GCA_000315645.2 - 1 - AKCU01 54 8946 8946 2012/11/27 2012/12/3 Scaffold Center for Genomic Regulation (CRG) -
Penicillium digitatum PHI26 1170229 PRJNA157541 157541 Fungi Ascomycetes 25.9851 48.9 GCA_000315665.1 - 1 - AKCT01 101 9118 9118 2012/11/27 2012/12/3 Scaffold Center for Genomic Regulation (CRG) -
Penicillium expansum 27334 PRJNA225688 225688 Fungi Ascomycetes 31.4157 48.2 GCA_000688875.1 - - - JHUC01 1231 - - 2014/4/8 2014/4/18 Contig JCVI SAMN02716838
Penicillium fuscoglaucum FM041 1439350 0 Fungi Ascomycetes 36.0855 - GCA_000576735.1 - - - CBXP01 953 - - - - Scaffold - -
Penicillium nalgiovense FM193 1439352 0 Fungi Ascomycetes 31.9375 - GCA_000577395.1 - - - CBXQ01 869 - - - - Scaffold - -
Penicillium paneum FM227 1439348 0 Fungi Ascomycetes 26.5793 - GCA_000577715.1 - - - CBXN01 224 - - - - Scaffold - -
Penicillium paxilli ATCC 26601 1292256 PRJNA189173 189173 Fungi Ascomycetes 34.8025 47.9 GCA_000347475.1 - - - AOTG01 420 - - 2013/3/18 2013/3/19 Scaffold Massey University -
Penicillium roqueforti 5082 0 Fungi Ascomycetes 29.01 48.7 GCA_000513255.1 - - - CBMR01 48 12425 12319 2013/8/1 2014/3/7 Scaffold - -
Phialophora europaea CBS 101466 1220924 PRJNA172438 172438 Fungi Ascomycetes 28.7813 54 GCA_000365145.2 - - - AOBU01 19 11153 11094 2013/4/15 2013/12/11 Scaffold Broad Institute -
Thermomyces lanuginosus SSBP 1158138 PRJNA88097 88097 Fungi Ascomycetes 19.1555 52.2 GCA_000315935.1 - - - ANHP01 311 - - 2012/11/29 2013/7/25 Contig Durban University of Technology -
Togninia minima UCRPA7 1286976 PRJNA188116 188116 Fungi Ascomycetes 47.4654 49.7 GCA_000392275.1 - - - AORD01 624 8834 8834 2013/5/10 2014/5/7 Scaffold UC Davis -
Trichophyton equinum CBS 127.97 559882 PRJNA20577 20577 Fungi Ascomycetes 24.1582 47.4 GCA_000151175.1 - - - ABWI01 125 8785 8676 2008/10/15 2011/3/21 Scaffold Broad Institute -
Trichophyton interdigitale H6 1215336 PRJNA186827 186827 Fungi Ascomycetes 21.9384 48.9 GCA_000616785.1 - - - AOKS01 2831 8221 8397 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091669
Trichophyton interdigitale MR816 1215338 PRJNA186835 186835 Fungi Ascomycetes 22.4696 48 GCA_000622975.1 - - - AOKY01 956 8083 8282 2014/4/2 2014/5/9 Contig Broad Institute SAMN01091671
Trichophyton rubrum CBS 100081 1215328 PRJNA186828 186828 Fungi Ascomycetes 23.0618 47.2 GCA_000616805.1 - - - AOKT01 550 8985 10637 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091661
Trichophyton rubrum CBS 118892 559305 PRJNA38221 38221 Fungi Ascomycetes 22.53 48.3 GCA_000151425.1 - - - ACPH01 36 8804 8706 2009/9/16 2011/5/6 Scaffold Broad Institute -
Trichophyton rubrum CBS 202.88 1215334 PRJNA186833 186833 Fungi Ascomycetes 23.1164 47.9 GCA_000616985.1 - - - AOKX01 533 9162 10820 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091667
Trichophyton rubrum CBS 288.86 1215330 PRJNA186829 186829 Fungi Ascomycetes 23.1285 47.2 GCA_000616825.1 - - - AOKU01 539 9008 10653 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091663
Trichophyton rubrum CBS 289.86 1215329 PRJNA186830 186830 Fungi Ascomycetes 23.0518 47.2 GCA_000616845.1 - - - AOKV01 521 8961 10598 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091662
Trichophyton rubrum CBS 735.88 1215332 PRJNA186832 186832 Fungi Ascomycetes 22.6301 47.8 GCA_000616965.1 - - - JHQM01 342 9023 10776 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091665
Trichophyton rubrum D6 1215335 PRJNA186838 186838 Fungi Ascomycetes 23.1245 47.2 GCA_000622995.1 - - - AOLB01 574 9007 10659 2014/4/2 2014/5/9 Contig Broad Institute SAMN01091668
Trichophyton rubrum MR1448 1215339 PRJNA186836 186836 Fungi Ascomycetes 23.1284 47.2 GCA_000616905.1 - - - AOKZ01 572 9018 10643 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091672
Trichophyton rubrum MR1459 1215341 PRJNA186839 186839 Fungi Ascomycetes 23.1626 47.2 GCA_000616945.1 - - - AOLC01 486 9077 10813 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091674
Trichophyton rubrum MR850 1215337 PRJNA186826 186826 Fungi Ascomycetes 23.1653 47.2 GCA_000616765.1 - - - AOKR01 535 9032 10686 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091670
Trichophyton soudanense CBS 452.61 1215331 PRJNA186831 186831 Fungi Ascomycetes 22.8544 47.5 GCA_000616865.1 - - - AOKW01 420 9016 10671 2014/4/2 2014/4/8 Scaffold Broad Institute SAMN01091664
Trichophyton tonsurans CBS 112818 647933 PRJNA38223 38223 Fungi Ascomycetes 22.9886 48.1 GCA_000151455.1 - - - ACPI01 111 8625 8521 2009/8/7 2011/3/21 Scaffold Broad Institute -
Trichophyton verrucosum HKI 0517 663202 PRJNA39693 39693 Fungi Ascomycetes 22.541 48.2 GCA_000151505.1 - - - ACYE01 523 8086 8028 2010/3/17 2010/8/12 Scaffold Arthroderma Genome Sequencing Consortium -
Uncinocarpus reesii 1704 336963 PRJNA15634 15634 Fungi Ascomycetes 22.3497 48.7 GCA_000003515.2 - - - AAIW01 45 7856 7760 2005/9/13 2009/9/15 Scaffold Broad Institute -
Pneumocystis jirovecii 42068 PRJEA68827 68827 Fungi Ascomycetes 8.17998 28.4 GCA_000333975.2 - - - CAKM01 358 3733 3520 2012/12/10 2012/12/13 Contig Vital-IT / High Performance Computing Center -
Pneumocystis murina B123 1069680 PRJNA70803 70803 Fungi Ascomycetes 7.45136 26.9 GCA_000349005.1 - - - AFWA01 17 3609 3838 2013/3/25 2013/3/25 Contig Broad Institute -
Saitoella complicata NRRL Y-17804 698492 PRJDA63243 63243 Fungi Ascomycetes 14.2209 52.5 GCA_000227095.2 - - - BACD02 1800 - - 2011/5/11 2014/3/20 Contig Saitoella complicata genome sequencing consortium -
Schizosaccharomyces cryophilus OY26 653667 PRJNA38373 38373 Fungi Ascomycetes 11.5548 37.7 GCA_000004155.2 - - - ACQJ02 30 5494 5180 2009/11/13 2013/7/31 Scaffold Broad Institute -
Schizosaccharomyces japonicus yFS275 402676 PRJNA13640 13640 Fungi Ascomycetes 11.3004 43.7 GCA_000149845.1 - - - AATM01 20 5227 4814 2006/10/11 2013/8/16 Scaffold Broad Institute -
Schizosaccharomyces octosporus yFS286 483514 PRJNA13639 13639 Fungi Ascomycetes 11.6345 37.5 GCA_000150505.2 - - - ABHY03 5 5347 4986 2007/12/12 2013/7/30 Scaffold Broad Institute -
Schizosaccharomyces pombe 4896 PRJNA13836 13836 Fungi Ascomycetes 12.5913 36.0381 GCA_000002945.2 3 1 - - 4 6991 5133 2002/2/28 2013/4/30 Chromosome with gaps S. pombe European Sequencing Consortium (EUPOM) -
Taphrina deformans PYCC 5710 1097556 PRJEA74523 74523 Fungi Ascomycetes 13.3942 49.6 GCA_000312925.2 - - - CAHR02 403 - 4651 2012/11/5 2013/10/10 Scaffold "Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa" -

Green Algae ゲノムプロジェクト

#Organism/Name TaxID BioProject Accession BioProject ID Group SubGroup Size (Mb) GC% Assembly Accession Chromosomes Organelles Plasmids WGS Scaffolds Genes Proteins Release Date Modify Date Status Center BioSample Accession
Chlamydomonas reinhardtii 3055 PRJNA12260 12260 Plants Green Algae 120.405 63.8478 GCA_000002595.2 - 2 - ABCN01 1558 14488 14489 2007/08/03 2009/08/26 Scaffold DOE Joint Genome Institute -
Ostreococcus tauri 70448 PRJNA12912 12912 Plants Green Algae 12.5723 59.0186 GCA_000214015.1 20 2 - CAID01 22 8114 7994 2010/10/15 2012/04/10 Chromosome with gaps Laboratoire Arago, France -
Ostreococcus lucimarinus CCE9901 436017 PRJNA13044 13044 Plants Green Algae 13.2049 60.4431 GCA_000092065.1 21 - - - 21 7640 7603 2007/04/10 2011/01/14 Gapless Chromosome US DOE Joint Genome Institute -
Volvox carteri f. nagariensis 3068 PRJNA13109 13109 Plants Green Algae 137.684 56 GCA_000143455.1 - - - ACJH01 1251 14437 14436 2010/07/06 2010/08/13 Scaffold US DOE Joint Genome Institute (JGI-PGF) -
Chlorella variabilis 554065 PRJNA45853 45853 Plants Green Algae 46.1595 67.1 GCA_000147415.1 - - - ADIC01 414 9780 9780 2010/08/31 2014/05/05 Scaffold JGI SAMN02743869
Micromonas pusilla CCMP1545 564608 PRJNA15678 15678 Plants Green Algae 22.0001 65.8584 GCA_000151265.1 - 1 - ACCP01 22 10288 10269 2009/04/07 2010/08/16 Scaffold Micromonas Genome Consortium -
Coccomyxa subellipsoidea C-169 574566 PRJNA32657 32657 Plants Green Algae 48.8266 52.9 GCA_000258705.1 - - - AGSI01 29 9915 9839 2012/04/13 2012/06/19 Contig JGI -
Micromonas sp. RCC299 296587 PRJNA15676 15676 Plants Green Algae 21.1093 63.8223 GCA_000090985.2 17 2 - - 19 10127 10140 2009/04/10 2009/08/04 Gapless Chromosome Micromonas genome consortium -
Helicosporidium sp. ATCC 50920 1291522 PRJNA188927 188927 Plants Green Algae 12.3738 61.7 GCA_000690575.1 - - - AYPS01 - 6033 6033 2014/05/13 2014/05/13 Contig University of British Columbia SAMN02384563

Red Algae ゲノムプロジェクト

#Organism/Name TaxID BioProject Accession BioProject ID Group SubGroup Size (Mb) GC% Assembly Accession Chromosomes Organelles Plasmids WGS Scaffolds Genes Proteins Release Date Modify Date Status Center BioSample Accession
Cyanidioschyzon merolae strain 10D 280699 PRJNA10792 10792 Other Other 16.5467 55.0171 GCA_000091205.1 20 - - - 20 6170 4803 2004/04/09 2013/09/21 Gapless Chromosome National Institute of Genetics, Japan -
Galdieria sulphuraria 130081 PRJNA13023 13023 Other Other 13.712 37.7 GCA_000341285.1 - - - ADNM02 433 6723 7174 2013/01/08 2013/04/03 Scaffold Galdieria sulphuraria Genome Project -
Chondrus crispus 2769 PRJEA78309 78309 Other Other 104.98 52.8585 GCA_000350225.2 - 1 - CAKH01 926 9843 9807 2013/03/26 2013/03/26 Scaffold Genoscope - Centre National de Sequencage -
Porphyridium purpureum 35688 PRJNA189757 189757 Other Other 19.4519 55.5 GCA_000397085.1 - - - AROW01 3014 - - 2013/05/16 2013/05/16 Contig Rutgers University -

対象真核生物種のゲノム情報を扱う主なデータベース

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