BH12.12/SPARQLthon11/TogoStanza rename
提供:TogoWiki
目次 |
TogoStanzaの名前整理と配置変更
Gene Report
- Names and origin, protein_names_and_origin → Protein names, protein_names
- Genomic context, gene_view → Genomic context, genome_genomic_context
- Gene attributes, gene_attributes → Gene attributes, gene_attributes (Herokuから移行)
- Nucleotide sequence, nucleotide_sequences → Nucleotide sequence, nucleotide_sequences
- Attributes, protein_attributes → Protein attributes, protein_attributes
- Protein sequence, protein_sequences → Protein sequence, protein_sequences
- General annotation, protein_general_annotation → Protein general annotation, protein_general_annotation
- Ontologies, protein_ontologies → Protein ontologies, protein_ontologies
- Sequence annotation, protein_sequence_annotation → Protein sequence annotation, protein_sequence_annotation
- Pfam plot, pfam_plot → Pfam plot, protein_pfam_plot
- 新規 → Protein orthologs, protein_orthologs
- References, protein_references → Protein references, protein_references
- Cross references, protein_cross_references → Protein cross references, protein_cross_references
- Entry information, protein_entry_information → スタンザ廃止
Organism Report
- Organism Name, organism_name → Organism name, organism_names
- Genome Information, genome_information → Genome information, genome_information (Herokuから移行)
- 新規 → Ortholog profile, taxonomy_ortholog_profile
- Lineage Information, lineage_information → Taxonomic information, lineage_information
- Lineage Tree, taxonomy_tree → Taxonomic linage, taxonomy_linage
- BRC metadata, brc_metadata → Culture collections, organism_culture_collections (Herokuから移行)
- 新規 → Medium information, organism_medium_information
- Phenotype Information, phenotype_information → Phenotype information, organism_phyenotype
- Plot, taxonomy_plot → Genomic plot, genome_plot
- Pathogen Information, pathogen_info → Pathogen information, organism_pathogen_information (Herokuから移行)
- Cross Reference, taxonomy_cross_references → Organism cross references, organism_cross_references
- Genome Cross references, genome_cross_references → Genome cross references, genome_cross_references (あらたに表示)
Environment Report
- Environmental attributes, environment_attributes
- Inhabitants statistics, environment_inhabitants_statistics
- Inhabitants, environment_inhabitants
- Geographical map, environment_geographical_map
- Taxonomic composition, environment_taxonomic_composition
- Environmental ontology (MEO), environment_environmental_ontology
- 課題
- Ontologies, BRC metadata, Pathogen information, Gene attributesスタンザのHelpを作る
- geneset, geneset_entry, variation helpはgemなスタンザサーバが出来るまで保留
- スタンザ命名ルール: 大文字は一単語目だけ
- スタンザ引数命名ルール: [biological aspect]_[definition1]_[definition2]