BH12.12/SPARQLthon11/TogoStanza rename

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目次

TogoStanzaの名前整理と配置変更

Gene Report

  1. Names and origin, protein_names_and_origin → Protein names, protein_names
  2. Genomic context, gene_view → Genomic context, genome_genomic_context
  3. Gene attributes, gene_attributes → Gene attributes, gene_attributes (Herokuから移行)
  4. Nucleotide sequence, nucleotide_sequences → Nucleotide sequence, nucleotide_sequences
  5. Attributes, protein_attributes → Protein attributes, protein_attributes
  6. Protein sequence, protein_sequences → Protein sequence, protein_sequences
  7. General annotation, protein_general_annotation → Protein general annotation, protein_general_annotation
  8. Ontologies, protein_ontologies → Protein ontologies, protein_ontologies
  9. Sequence annotation, protein_sequence_annotation → Protein sequence annotation, protein_sequence_annotation
  10. Pfam plot, pfam_plot → Pfam plot, protein_pfam_plot
  11. 新規 → Protein orthologs, protein_orthologs
  12. References, protein_references → Protein references, protein_references
  13. Cross references, protein_cross_references → Protein cross references, protein_cross_references
  14. Entry information, protein_entry_information → スタンザ廃止

Organism Report

  1. Organism Name, organism_name → Organism name, organism_names
  2. Genome Information, genome_information → Genome information, genome_information (Herokuから移行)
  3. 新規 → Ortholog profile, taxonomy_ortholog_profile
  4. Lineage Information, lineage_information → Taxonomic information, lineage_information
  5. Lineage Tree, taxonomy_tree → Taxonomic linage, taxonomy_linage
  6. BRC metadata, brc_metadata → Culture collections, organism_culture_collections (Herokuから移行)
  7. 新規 → Medium information, organism_medium_information
  8. Phenotype Information, phenotype_information → Phenotype information, organism_phyenotype
  9. Plot, taxonomy_plot → Genomic plot, genome_plot
  10. Pathogen Information, pathogen_info → Pathogen information, organism_pathogen_information (Herokuから移行)
  11. Cross Reference, taxonomy_cross_references → Organism cross references, organism_cross_references
  12. Genome Cross references, genome_cross_references → Genome cross references, genome_cross_references (あらたに表示)

Environment Report

  1. Environmental attributes, environment_attributes
  2. Inhabitants statistics, environment_inhabitants_statistics
  3. Inhabitants, environment_inhabitants
  4. Geographical map, environment_geographical_map
  5. Taxonomic composition, environment_taxonomic_composition
  6. Environmental ontology (MEO), environment_environmental_ontology
  • 課題
    • Ontologies, BRC metadata, Pathogen information, Gene attributesスタンザのHelpを作る
    • geneset, geneset_entry, variation helpはgemなスタンザサーバが出来るまで保留
    • スタンザ命名ルール: 大文字は一単語目だけ
    • スタンザ引数命名ルール: [biological aspect]_[definition1]_[definition2]
「/mw/BH12.12/SPARQLthon11/TogoStanza_rename」より作成