D2RQ のマッピング
提供：TogoWiki
- TSSのデータを優先
- TSSにある遺伝子IDは独自IDなので公共DBへのID対応表があれば対処可能
Class
- vocab:bs_data_9606_LC2ad;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3; http://purl.obolibrary.org/obo/SO_0001697 Sequence Types and Features Ontology
- vocab:chromhmm_inf_9606_LC2ad;
- vocab:cpg_bincount_9606_ucsc; http://purl.obolibrary.org/obo/SO_0000307 Sequence Types and Features Ontology
- vocab:refGene_9606;
- vocab:rnaseq_qty_9606_LC2ad;
- vocab:tss_bincount_9606_chrY_LC2ad; http://purl.obolibrary.org/obo/SO_0000315 Sequence Types and Features Ontology
- vocab:vcf_inf_9606_chrY_LC2ad;
- vocab:w_rnaseq_refgene;
- ChIP
- H3K4me3 http://purl.obolibrary.org/obo/SO_0001706
- H3K4me1 http://purl.obolibrary.org/obo/SO_0001705
- H3K27me3 http://purl.obolibrary.org/obo/SO_0001709
- H3K9me3 http://purl.obolibrary.org/obo/SO_0001707
- H3K36me3 http://purl.obolibrary.org/obo/SO_0001724
- H3K27ac http://purl.obolibrary.org/obo/SO_0001721
Prediate
- vocab:bs_data_9606_LC2ad_bs_data_id;
- vocab:bs_data_9606_LC2ad_bin;
- vocab:bs_data_9606_LC2ad_chr;
- vocab:bs_data_9606_LC2ad_pos;
- vocab:bs_data_9606_LC2ad_cg_num;
- vocab:bs_data_9606_LC2ad_ca_num;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_id;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_bin;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_chr;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_start;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_end;
- vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_num;
- vocab:chromhmm_inf_9606_LC2ad_id;
- vocab:chromhmm_inf_9606_LC2ad_bin;
- vocab:chromhmm_inf_9606_LC2ad_chr;
- vocab:chromhmm_inf_9606_LC2ad_start;
- vocab:chromhmm_inf_9606_LC2ad_end;
- vocab:chromhmm_inf_9606_LC2ad_type;
- vocab:chromhmm_inf_9606_LC2ad_color;
- vocab:cpg_bincount_9606_ucsc_id;
- vocab:cpg_bincount_9606_ucsc_bin;
- vocab:cpg_bincount_9606_ucsc_chr;
- vocab:cpg_bincount_9606_ucsc_start;
- vocab:cpg_bincount_9606_ucsc_end;
- vocab:cpg_bincount_9606_ucsc_name;
- vocab:cpg_bincount_9606_ucsc_length;
- vocab:cpg_bincount_9606_ucsc_cpgNum;
- vocab:cpg_bincount_9606_ucsc_gcNum;
- vocab:cpg_bincount_9606_ucsc_perCpg;
- vocab:cpg_bincount_9606_ucsc_perGc;
- vocab:cpg_bincount_9606_ucsc_obsExp;
- vocab:refGene_9606_bin;
- vocab:refGene_9606_name;
- vocab:refGene_9606_chrom;
- vocab:refGene_9606_strand;
- vocab:refGene_9606_txStart;
- vocab:refGene_9606_txEnd;
- vocab:refGene_9606_cdsStart;
- vocab:refGene_9606_cdsEnd;
- vocab:refGene_9606_exonCount;
- vocab:refGene_9606_exonStarts;
- vocab:refGene_9606_exonEnds;
- vocab:refGene_9606_score;
- vocab:refGene_9606_name2;
- vocab:refGene_9606_cdsStartStat;
- vocab:refGene_9606_cdsEndStat;
- vocab:refGene_9606_exonFrames;
- vocab:refGene_9606_refgene_id;
- vocab:refGene_9606_step;
- vocab:rnaseq_qty_9606_LC2ad_group_id;
- vocab:rnaseq_qty_9606_LC2ad_tag;
- vocab:rnaseq_qty_9606_LC2ad_ppm;
- vocab:rnaseq_qty_9606_LC2ad_rpkm;
- vocab:tss_bincount_9606_chrY_LC2ad_id;
- vocab:tss_bincount_9606_chrY_LC2ad_bin;
- vocab:tss_bincount_9606_chrY_LC2ad_chr; dbtss:chr
- vocab:tss_bincount_9606_chrY_LC2ad_pos;
- vocab:tss_bincount_9606_chrY_LC2ad_strand; dbtss:strand
- vocab:tss_bincount_9606_chrY_LC2ad_count; dbtss:count
- vocab:tss_bincount_9606_chrY_LC2ad_repgrp; dbtss:repgrp
- vocab:tss_bincount_9606_chrY_LC2ad_repprm;
- vocab:tss_bincount_9606_chrY_LC2ad_rep; dbtss:rep #representative （同一遺伝子での代表TSSフラグ）
- vacab:tss_cell_type; #細胞腫（テーブル内にはデータなし。テーブル名に付いている）
- 細胞名のオントロジーはEFO, CLOあたりにある
- vocab:vcf_inf_9606_chrY_LC2ad_id;
- vocab:vcf_inf_9606_chrY_LC2ad_bin;
- vocab:vcf_inf_9606_chrY_LC2ad_chr;
- vocab:vcf_inf_9606_chrY_LC2ad_pos;
- vocab:vcf_inf_9606_chrY_LC2ad_known;
- vocab:vcf_inf_9606_chrY_LC2ad_bases;
- vocab:vcf_inf_9606_chrY_LC2ad_ad;
- vocab:vcf_inf_9606_chrY_LC2ad_gt;
- vocab:vcf_inf_9606_chrY_LC2ad_gq;
- vocab:vcf_inf_9606_chrY_LC2ad_af;
- vocab:vcf_inf_9606_chrY_LC2ad_info;
- vocab:vcf_inf_9606_chrY_LC2ad_detail;
- vocab:w_rnaseq_refgene_id;
- vocab:w_rnaseq_refgene_group_id;
- vocab:w_rnaseq_refgene_name;
- vocab:w_rnaseq_refgene_chr;
- vocab:w_rnaseq_refgene_strand;
- vocab:w_rnaseq_refgene_utr_start;
- vocab:w_rnaseq_refgene_utr_end;
- vocab:w_rnaseq_refgene_cds_start;
- vocab:w_rnaseq_refgene_cds_end;
- vocab:w_rnaseq_refgene_exn_starts;
- vocab:w_rnaseq_refgene_exn_ends;
- vocab:w_rnaseq_refgene_symbol;
- vocab:w_rnaseq_refgene_step;
- vocab:w_rnaseq_refgene_geneid;
