BH12.12/op.ENcode/ENCODE論文一覧
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#ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia | #ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia | ||
##http://genome.cshlp.org/content/22/9/1813 | ##http://genome.cshlp.org/content/22/9/1813 | ||
| + | ##http://www.ncbi.nlm.nih.gov/pubmed/22955991 | ||
#Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome | #Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome | ||
##http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431487/ | ##http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3431487/ | ||
2012年12月19日 (水) 08:08時点における最新版
- An integrated encyclopedia of DNA elements in the human genome
- Landscape of transcription in human cells
- The accessible chromatin landscape of the human genome
- An expansive human regulatory lexicon encoded in transcription factor footprints
- Architecture of the human regulatory network derived from ENCODE data
- The long-range interaction landscape of gene promoters
- Annotation of functional variation in personal genomes using RegulomeDB
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- Discovery of hundreds of mirtrons in mouse and human small RNA data
- GENCODE: The reference human genome annotation for The ENCODE Project
- Linking disease associations with regulatory information in the human genome
- Long noncoding RNAs are rarely translated in two human cell lines
- Personal and population genomics of human regulatory variation
- Predicting cell-type–specific gene expression from regions of open chromatin
- RNA editing in the human ENCODE RNA-seq data
- Sequence and chromatin determinants of cell-type–specific transcription factor binding
- The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
- Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- Widespread plasticity in CTCF occupancy linked to DNA methylation
- A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
- Analysis of variation at transcription factor binding sites in Drosophila and humans
- Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3
- Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription related factors
- Functional analysis of transcription factor binding sites in human promoters
- Modeling gene expression using chromatin features in various cellular contexts
- The GENCODE pseudogene resource
- Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data
- Circuitry and dynamics of human transcription factor regulatory networks
- Evidence of abundant purifying selection in humans for recently acquired regulatory functions.
- Systematic localization of common disease-associated variation in regulatory DNA.
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
