SPARQLthon58/Umaka-command

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2017年7月28日 (金) 08:35時点におけるChi (トーク | 投稿記録)による版
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$ umaka
Life Science Dictionary http://lsd.dbcls.jp/sparql
Colil   http://colil.dbcls.jp/sparql
Allie   http://data.allie.dbcls.jp/sparql
WikiPathways    http://sparql.wikipathways.org
FirstAuthor Navigation  http://navi.first.lifesciencedb.jp/fanavi/sparql
OpenLifeData    http://sparql.openlifedata.org/
Bio2RDF http://bio2rdf.org/sparql
ChEMBL  http://www.ebi.ac.uk/rdf/services/chembl/sparql
...
$ umaka bio
Bio2RDF http://bio2rdf.org/sparql
BioModels       http://www.ebi.ac.uk/rdf/services/biomodels/sparql
BioGateway      http://www.semantic-systems-biology.org/biogateway/endpoint
LSDB Archive @ NBDC     https://dba-rdf.biosciencedbc.jp/sparql
BioSamples      http://www.ebi.ac.uk/rdf/services/biosamples/sparql
NBDC RDF Portal http://integbio.jp/rdf/sparql
$umaka -a bio
Bio2RDF http://bio2rdf.org/sparql       Alive
BioModels       http://www.ebi.ac.uk/rdf/services/biomodels/sparql      Alive
BioGateway      http://www.semantic-systems-biology.org/biogateway/endpoint     Alive
LSDB Archive @ NBDC     https://dba-rdf.biosciencedbc.jp/sparql Alive
BioSamples      http://www.ebi.ac.uk/rdf/services/biosamples/sparql     Alive
NBDC RDF Portal http://integbio.jp/rdf/sparql   Alive
National Center for Biomedical Ontologies       http://sparql.bioontology.org   Dead
Chembl @Uppsala http://rdf.farmbio.uu.se/chembl/sparql  Dead
FlyBase http://www.open-biomed.org.uk/sparql/endpoint/flybase   Dead
$ umaka micro
Microbial Genome Database for Comparative Analysis (MBGD)       http://sparql.nibb.ac.jp/sparql
MIcrobeDB.jp    http://genome.microbedb.jp/sparql
$ umaka -v micro
Microbial Genome Database for Comparative Analysis (MBGD)       http://sparql.nibb.ac.jp/sparql Alive   4       70
MIcrobeDB.jp    http://genome.microbedb.jp/sparql       Alive   4       64
$ umaka -h
usage: umaka [-h] [-a] [-v] ...

positional arguments:
  keywords       parts of endpoint name

optional arguments:
  -h, --help     show this help message and exit
  -a, --all      show all endpoints (alive and dead)
  -v, --verbose  show verbose information
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