D2RQ のマッピング

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  • TSSのデータを優先
    • TSSにある遺伝子IDは独自IDなので公共DBへのID対応表があれば対処可能

Class

Prediate

  • vocab:bs_data_9606_LC2ad_bs_data_id;
  • vocab:bs_data_9606_LC2ad_bin;
  • vocab:bs_data_9606_LC2ad_chr;
  • vocab:bs_data_9606_LC2ad_pos;
  • vocab:bs_data_9606_LC2ad_cg_num;
  • vocab:bs_data_9606_LC2ad_ca_num;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_id;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_bin;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_chr;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_start;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_end;
  • vocab:chip_inf_9606_chrY_LC2ad_H3K4me3_num;
  • vocab:chromhmm_inf_9606_LC2ad_id;
  • vocab:chromhmm_inf_9606_LC2ad_bin;
  • vocab:chromhmm_inf_9606_LC2ad_chr;
  • vocab:chromhmm_inf_9606_LC2ad_start;
  • vocab:chromhmm_inf_9606_LC2ad_end;
  • vocab:chromhmm_inf_9606_LC2ad_type;
  • vocab:chromhmm_inf_9606_LC2ad_color;
  • vocab:cpg_bincount_9606_ucsc_id;
  • vocab:cpg_bincount_9606_ucsc_bin;
  • vocab:cpg_bincount_9606_ucsc_chr;
  • vocab:cpg_bincount_9606_ucsc_start;
  • vocab:cpg_bincount_9606_ucsc_end;
  • vocab:cpg_bincount_9606_ucsc_name;
  • vocab:cpg_bincount_9606_ucsc_length;
  • vocab:cpg_bincount_9606_ucsc_cpgNum;
  • vocab:cpg_bincount_9606_ucsc_gcNum;
  • vocab:cpg_bincount_9606_ucsc_perCpg;
  • vocab:cpg_bincount_9606_ucsc_perGc;
  • vocab:cpg_bincount_9606_ucsc_obsExp;
  • vocab:refGene_9606_bin;
  • vocab:refGene_9606_name;
  • vocab:refGene_9606_chrom;
  • vocab:refGene_9606_strand;
  • vocab:refGene_9606_txStart;
  • vocab:refGene_9606_txEnd;
  • vocab:refGene_9606_cdsStart;
  • vocab:refGene_9606_cdsEnd;
  • vocab:refGene_9606_exonCount;
  • vocab:refGene_9606_exonStarts;
  • vocab:refGene_9606_exonEnds;
  • vocab:refGene_9606_score;
  • vocab:refGene_9606_name2;
  • vocab:refGene_9606_cdsStartStat;
  • vocab:refGene_9606_cdsEndStat;
  • vocab:refGene_9606_exonFrames;
  • vocab:refGene_9606_refgene_id;
  • vocab:refGene_9606_step;
  • vocab:rnaseq_qty_9606_LC2ad_group_id;
  • vocab:rnaseq_qty_9606_LC2ad_tag;
  • vocab:rnaseq_qty_9606_LC2ad_ppm;
  • vocab:rnaseq_qty_9606_LC2ad_rpkm;
    • vocab:tss_bincount_9606_chrY_LC2ad_id;
  • vocab:tss_bincount_9606_chrY_LC2ad_bin;
    • vocab:tss_bincount_9606_chrY_LC2ad_chr; dbtss:chr
    • vocab:tss_bincount_9606_chrY_LC2ad_pos;
    • vocab:tss_bincount_9606_chrY_LC2ad_strand; dbtss:strand
    • vocab:tss_bincount_9606_chrY_LC2ad_count; dbtss:count
    • vocab:tss_bincount_9606_chrY_LC2ad_repgrp; dbtss:repgrp
  • vocab:tss_bincount_9606_chrY_LC2ad_repprm;
    • vocab:tss_bincount_9606_chrY_LC2ad_rep; dbtss:rep #representative (同一遺伝子での代表TSSフラグ)
    • vacab:tss_cell_type; #細胞腫(テーブル内にはデータなし。テーブル名に付いている)
      • 細胞名のオントロジーはEFO, CLOあたりにある
  • vocab:vcf_inf_9606_chrY_LC2ad_id;
  • vocab:vcf_inf_9606_chrY_LC2ad_bin;
  • vocab:vcf_inf_9606_chrY_LC2ad_chr;
  • vocab:vcf_inf_9606_chrY_LC2ad_pos;
  • vocab:vcf_inf_9606_chrY_LC2ad_known;
  • vocab:vcf_inf_9606_chrY_LC2ad_bases;
  • vocab:vcf_inf_9606_chrY_LC2ad_ad;
  • vocab:vcf_inf_9606_chrY_LC2ad_gt;
  • vocab:vcf_inf_9606_chrY_LC2ad_gq;
  • vocab:vcf_inf_9606_chrY_LC2ad_af;
  • vocab:vcf_inf_9606_chrY_LC2ad_info;
  • vocab:vcf_inf_9606_chrY_LC2ad_detail;
  • vocab:w_rnaseq_refgene_id;
  • vocab:w_rnaseq_refgene_group_id;
  • vocab:w_rnaseq_refgene_name;
  • vocab:w_rnaseq_refgene_chr;
  • vocab:w_rnaseq_refgene_strand;
  • vocab:w_rnaseq_refgene_utr_start;
  • vocab:w_rnaseq_refgene_utr_end;
  • vocab:w_rnaseq_refgene_cds_start;
  • vocab:w_rnaseq_refgene_cds_end;
  • vocab:w_rnaseq_refgene_exn_starts;
  • vocab:w_rnaseq_refgene_exn_ends;
  • vocab:w_rnaseq_refgene_symbol;
  • vocab:w_rnaseq_refgene_step;
  • vocab:w_rnaseq_refgene_geneid;
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