BH14.14/RDFizingDatabaseGuidelineEnglishDraft0.1

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The DBCLS guideline for creating RDF data for the life sciences

Japanese version

目次

Objectives

Guidelines for making a RDF dataset

Guidelines for creating and using resource URIs

Use stable URIs

Design a resource URI as having an identifier in the last section of the path

Guidelines for making a RDF dataset

Provide appropriate ontology classes for a resource URI

At least resource URIs representing the primal subjects of a dataset should be explicitly defined as instances of appropriate ontology classes with the rdf:type property.

 uniprot:Q6GZX3 rdf:type core:Protein .

Provide labels for a resource URI

It is recommended to provide labels to a resource URI for enhancing human-readability of a resource's name. At least resource URIs representing the primal subjects of a dataset should have labels with the rdfs:label property. Language tagging for a label is also recommended when it is written in a natural language.

 uniprot:P51028 rdfs:label "wnt8a"@en .

Provide the identifier literal for a resource URI

It is recommended to provide an identifier literal to a resource URI. Identifier literals might be useful when writing a SPARQL query. At least each resource URIs representing the primal subject of a dataset should have an identifier literal with the dcterms:identifier (but not dc:identifier).

Link to other datasets

It is recommended to provide links to other datasets by using the URI registered in identifiers.org with the rdfs:seeAlso property. You can also provide those links by using the canonical URIs, which are created by original database provider. Unfortunately it's likely that database providers provide multiple URIs which refer to a same resource and using those URLs hinder integrative use of RDF datasets which are developed by different groups independently.

Link to references

When referring to a reference (e.g. scientific papers and books) the identifiers.org version of PubMed URI or DOI should be used with the dcterms:reference property.

 <a resource> dcterms:references <http://identifiers.org/pubmed/1234567> .

Provide meta information of a dataset

Provide meta and/or provenance information of a dataset.

Link to images

Use the foaf:depiction property when linking to an image.

Use a URI、a blank node and a literal appropriately

Guidelines for using and creating ontologies

Re-use existing ontologies

Re-use existing (widely-used) ontologies and vocabularies

Create an ontology

Define domains and ranges of the properties you created

Define domains and ranges of the properties you created with the rdfs:domain and rdfs:range properties

Provide a definition to ontology classes and properties you created

Guidelines for publishing a RDF database

Provide a version information

Provide a license

Publish the scheme of your data

Provide example SPARQL queries

Provide a set of representative queries on how to use your data in natural language along with the corresponding SPARQL query

Enable CORS for SPARQL endpoints

Enable CORS (Cross-Origin Resource Sharing) when providing a SPARQL endpoint

RDF models for life science data

How to describe a measurement item

Measurement values of an item with an unit

TBD

Link to an image

TBD

Useful links